| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2488824 = | 98 (1.200) | 5 (0.070) | 3/84 | NT | 5.8% | intergenic (‑39/‑377) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
| ? | AP009048 | 2488845 = | 79 (1.130) | intergenic (‑60/‑356) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS | |||||
TAGGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2488900‑2488824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGT > AP009048/2488845‑2488913 TAGGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT > 1:858176/1‑71TAGGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT > 1:5209797/1‑71 AGGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT < 1:183010/70‑1 GGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC < 1:5588308/71‑1 CCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCAT < 1:954395/71‑1 CCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCAT < 1:5571402/71‑1 CCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT < 1:7552466/67‑1 CTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCATT > 1:4554298/1‑71 TCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC < 1:6212148/67‑1 TCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC < 1:3255218/67‑1 CCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCATTC > 1:2586325/1‑70 CAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCA > 1:3203150/1‑66 CAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT > 1:2481942/1‑63 CAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT > 1:7789258/1‑63 AACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC > 1:6552282/1‑64 CGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTT > 1:7150376/1‑60 TCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC < 1:3302518/59‑1 TCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTC < 1:2383792/59‑1 CTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCAT > 1:4729155/1‑59 CTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCAT > 1:4211121/1‑59 ATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTT < 1:5258403/48‑1 ATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTT < 1:574515/48‑1 AGAATGAATGCTCTTTTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGT > 1:3655951/1‑68 AGAATGAATGCTCTTTTCATTCTTCATATCAAACACAGTGCATGTGT < 1:7319497/47‑1 AGAATGAATGCTCTTTTCATTCTTCATATCAAACACAGTGCATGTGT < 1:3443436/47‑1 AGAATGAATGCTCTTTTCATTCTTCATATCAAACACAGTGCATGTGT < 1:1985701/47‑1 GAATGAATGCTCTTTTCATTCTTCATATCAAACACAGTGCATGTGTTGC > 1:4006978/1‑49 TTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAAT > 1:56648/1‑71 TCATTCTTCATATCAAAGACAGTGCATGTTTTGCACATTATCCCAGGAACGTT < 1:6055136/53‑1 TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTG < 1:7270427/54‑1 TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTG < 1:968245/54‑1 TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTG < 1:543695/54‑1 TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAA < 1:6563405/49‑1 TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAA < 1:541694/49‑1 CATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAAT > 1:2252413/1‑69 ATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGA < 1:6468611/70‑1 ATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGA < 1:540587/70‑1 ATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGA < 1:5306979/70‑1 TCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCC < 1:894854/40‑1 CTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGT < 1:125274/70‑1 TAGGCCTCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2488900‑2488824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGT > AP009048/2488845‑2488913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |