| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2500055 | 62 (0.760) | 8 (0.110) | 4/86 | NT | 10.2% | intergenic (‑207/‑89) | yfdX/ypdI | hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis |
| ? | AP009048 | = 2500081 | 87 (1.220) | intergenic (‑233/‑63) | yfdX/ypdI | hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis | |||||
TTAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2499981‑2500055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTATATAAGAATAGTTCTCTGC < AP009048/2500081‑2500015 TTAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCA > 1:4358226/1‑71 TAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCAT > 1:7157908/1‑71 TAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCAT > 1:3943082/1‑71 GTCTTACAATTGTAGGAATATGCTTCCTGGCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATT < 1:6627389/70‑1 ACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCA < 1:3344947/63‑1 CAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCA < 1:1316815/62‑1 GAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATT < 1:7624303/55‑1 AATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTA > 1:1647605/1‑71 AATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTA > 1:3586420/1‑71 AATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTT > 1:4918274/1‑70 ATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTT < 1:4670110/52‑1 CCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTACATCGATA < 1:957863/70‑1 CCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTACATCGATA < 1:6748611/70‑1 TTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTACATCGATATAATAAA > 1:3648886/1‑60 TTCTTATATACCACAAAGAGATGTCATTTAATTAATCAGTATTTACATCGATATAATAAA > 1:1552179/1‑60 ATATACCACAAAGAGATGTCATTTAATTAATCAGTATT < 1:1451390/38‑1 CATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTATATAAGAA < 1:6090273/62‑1 CATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCT < 1:7695968/46‑1 ATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTAT > 1:3733166/1‑54 ATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTAT > 1:5243391/1‑54 ATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTAT > 1:1843692/1‑54 ATTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTG < 1:6625994/50‑1 TTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTATATAAGAATAGTTCTCTGC > 1:323630/1‑71 TTTAATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTATATAAGAATAGTTCTCTGC > 1:7490872/1‑71 TTAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACCACAAAGAGATGTCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2499981‑2500055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaATTAATCAGTATTTACATCGATATAATAAATGACATCTCTTTGTGGTATATAAGAATAGTTCTCTGC < AP009048/2500081‑2500015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |