| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2724513 | 57 (0.700) | 3 (0.040) | 3/84 | NT | 5.3% | intergenic (‑111/+212) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
| ? | AP009048 | = 2724532 | 58 (0.830) | intergenic (‑130/+193) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA | |||||
GCTTTTGTTTATTTTTTTTGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2724444‑2724513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccatTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTTTAC < AP009048/2724532‑2724463 GCTTTTGTTTATTTTTTTTGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAACCAT < 1:3018463/70‑1 TTTGTTTATTTTTTTTGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTT < 1:869174/61‑1 TTTTTTTGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAA > 1:7180746/1‑54 AATATTATACATTTGTTGCATATCATTATGCAACCTTAACCAT < 1:2538194/43‑1 TATTATACATTTGTTGCATATCATTATGCAACCTTAACCATTTTCCTGCTAACTAAATTCATGGTTAAGG < 1:1709475/70‑1 ACATTTGTTGCATATCATTATGCAACCTTAACCATTTTCCTGCTAACTAAATTCATGGTT > 1:1644667/1‑60 ATTTGTTGCATATCATTATGCAACCTTAACCATTTTCCTGCTAACTAAATTCAT < 1:4579332/54‑1 ACCATTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCC < 1:776042/70‑1 CCATTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTT < 1:1520271/71‑1 CATTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTT > 1:4742924/1‑70 CATTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAA < 1:2446416/53‑1 TTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTTTAC < 1:4163935/71‑1 TTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTTTA > 1:2249433/1‑70 TTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTTTA > 1:3956181/1‑70 TTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATA < 1:5370036/37‑1 TTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATA < 1:6091218/37‑1 GCTTTTGTTTATTTTTTTTGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2724444‑2724513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccatTTTCCTGCTAACTAAATTCATGGTTAAGGTTGCATAATGATATGCAACAAATGTATAATATTTCCTTTAC < AP009048/2724532‑2724463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |