| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2761456 = | 71 (0.870) | 6 (0.090) | 4/84 | NT | 8.6% | coding (741/2190 nt) | yfjK | conserved hypothetical protein |
| ? | AP009048 | 2761483 = | 67 (0.960) | coding (714/2190 nt) | yfjK | conserved hypothetical protein | |||||
CATTGATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2761531‑2761456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtttGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > AP009048/2761483‑2761551 CATTGATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGC < 1:859047/71‑1 TGATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGT > 1:7678338/1‑71 ATCATCAAGTCGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT < 1:5680011/71‑1 ATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT < 1:391851/71‑1 ATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT < 1:5194687/71‑1 ATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT < 1:119410/71‑1 AGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGC < 1:5498892/59‑1 CGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCA > 1:127449/1‑45 CGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCA > 1:2355754/1‑45 CGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCA > 1:2364995/1‑45 CGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCA > 1:2724432/1‑45 CAAACTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGAT < 1:18148/52‑1 AAACTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGAT < 1:1208248/71‑1 AAACTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGAT < 1:3445688/71‑1 ACTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGATGACT > 1:179124/1‑53 CTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATaat > 1:7645062/1‑68 CTGCTTAAGGTCTCCAGGCAGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCCTCTTGATGATCAA > 1:6056566/1‑71 CAGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTC < 1:452285/57‑1 AGTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTG < 1:4041097/71‑1 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTT < 1:3203590/64‑1 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCT > 1:2241144/1‑61 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCT > 1:7059306/1‑61 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGAT < 1:1125491/45‑1 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGAT < 1:3632801/45‑1 GTTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGAT < 1:7931617/45‑1 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTT < 1:1399931/61‑1 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCC > 1:3792286/1‑56 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCC > 1:7167918/1‑56 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCC > 1:2674806/1‑56 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCC > 1:4800453/1‑55 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGT > 1:7318704/1‑53 TTTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTT < 1:6486916/41‑1 TTGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > 1:5976872/1‑71 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > 1:2189815/1‑70 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > 1:4292715/1‑70 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > 1:2986591/1‑70 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCT > 1:3170140/1‑58 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGA > 1:4934712/1‑41 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGA > 1:6526036/1‑41 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGA > 1:480242/1‑41 TGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGA > 1:279730/1‑41 TGCTTAACGCAATGTTGAGCGCGATGACTCGTTCGTCTTGA > 1:3384931/1‑41 CATTGATCATCAAGACGAACGAGTCATCGAGCTCAACATTGCGTTAAGCAAACTGCTTAAGGTCTCCAGGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2761531‑2761456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtttGCTTAACGCAATGTTGAGCTCGATGACTCGTTCGTCTTGATGATCAATGTCCCCGCTTTTCAGTTGTCG > AP009048/2761483‑2761551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |