| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2763935 = | 79 (0.970) | 5 (0.070) | 3/88 | NT | 6.5% | intergenic (‑126/+234) | yfjL/yfjM | hypothetical protein/hypothetical protein |
| ? | AP009048 | 2763964 = | 73 (1.000) | intergenic (‑155/+205) | yfjL/yfjM | hypothetical protein/hypothetical protein | |||||
TACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2764009‑2763935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgaCGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTT > AP009048/2763964‑2764031 TACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATC > 1:3121513/1‑71 ACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCC > 1:5785104/1‑71 ACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCC > 1:552150/1‑71 CCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATC < 1:644661/69‑1 CCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATC < 1:1931174/69‑1 TTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTG > 1:3657678/1‑70 TACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGA > 1:98147/1‑70 ATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATC > 1:3199805/1‑43 ATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATC > 1:3492166/1‑43 TATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTG < 1:6631905/45‑1 TATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTG < 1:5207796/45‑1 AACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCC < 1:5674501/40‑1 AGGGTTACAATATTTGTGGAATCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAAC > 1:3113781/1‑65 GGGTTACAATATTTGTGGAATCCTGACGTCTAATTTGGTTATATAAC > 1:4453876/1‑47 GTTACAATATTTGTGGAATCCTGACGTCTAATTTGGT > 1:3745051/1‑37 GTTACAATATTTGTGGAATCCTGACGTCTAATTTGGT > 1:7528608/1‑37 GTTACAATATTTGTGGAATCCTGACGTCTAATTTGGT > 1:2447478/1‑37 CTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTT < 1:4340248/71‑1 CTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTA < 1:3825352/50‑1 CTGACGTCTAATTTGGTTATATAACATACTGCCCCAA > 1:2583202/1‑37 TGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTT > 1:4243819/1‑71 GACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAG > 1:6184911/1‑45 ACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTT < 1:6913787/69‑1 ACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTT < 1:6954717/69‑1 TACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2764009‑2763935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgaCGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTT > AP009048/2763964‑2764031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |