| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2891111 = | 49 (0.600) | 5 (0.070) | 3/86 | NT | 11.4% | coding (242/366 nt) | ygcM | 6‑pyruvoyl tetrahydrobiopterin synthase |
| ? | AP009048 | 2891133 = | 35 (0.490) | coding (264/366 nt) | ygcM | 6‑pyruvoyl tetrahydrobiopterin synthase | |||||
ACCGCACTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2891186‑2891111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAAC > AP009048/2891133‑2891201 ACCGCACTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTGGCTGGTTGG < 1:1539900/71‑1 CACTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTT > 1:3963564/1‑71 CACTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTT > 1:1714153/1‑71 CTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTT < 1:3261081/69‑1 TAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGT > 1:5141773/1‑45 CCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT > 1:1463299/1‑45 TGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT < 1:6935193/43‑1 ATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT > 1:3116483/1‑41 ATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT > 1:617406/1‑41 AAACCTCGCTGGTTGGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTG > 1:1544416/1‑71 AAACCTCGCTGGTTGGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAG < 1:2664765/69‑1 AAACCTCGCTGGTTGGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAG < 1:6574986/69‑1 CGCTGGTTGGGTTTTAGCAAAATGGATTTGGGATCAGGT > 1:415684/1‑39 CGCTGGTTGGGTTTTAGCAAAATGGATTTGGGATCAGGT > 1:6113385/1‑39 GGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAA > 1:6804421/1‑68 GTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGA < 1:20981/71‑1 GTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCG < 1:824815/45‑1 TTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCt < 1:6993013/44‑2 TTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAA < 1:463974/71‑1 TTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAA < 1:1156287/71‑1 TTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTT < 1:5444797/49‑1 TTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAAC > 1:336233/1‑71 TTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGC > 1:6543468/1‑43 TTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCC > 1:6087594/1‑41 ACCGCACTTAACAGCGGCACAACGGGTTTAACCTGATCCCAAATCCATTTTGCTAAAACCTCGCTGGTTGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2891186‑2891111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAAC > AP009048/2891133‑2891201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |