| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2992845 | 73 (0.900) | 4 (0.060) | 4/86 | NT | 5.1% | pseudogene (149/375 nt) | pbl | ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme |
| ? | AP009048 | = 2992861 | 86 (1.200) | pseudogene (165/375 nt) | pbl | ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme | |||||
CAAGAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2992771‑2992845‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattccACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTTTATATTG < AP009048/2992861‑2992792 CAAGAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATA < 1:4721293/71‑1 AGAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATA < 1:3778042/69‑1 GAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTC < 1:3848970/71‑1 GAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTC > 1:3053363/1‑71 ATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTCCACGTTTTTTTAACAGGGG > 1:2904928/1‑70 GAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTCCACGTTTTTTTAACAGGGGAATA > 1:405498/1‑67 TTGGTTAATGCAGATAAACCAGATGCATATTCCACGTTTTTTTAACAGGGGAAT < 1:2668924/54‑1 GGTTAATGCAGATAAACCAGATGCATATTCCACGTTTTTTTAACAGGGGAATA > 1:809571/1‑53 ATATTCCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTT > 1:6480650/1‑70 ATATTCCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTT > 1:2278037/1‑70 TATTCCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTTTA > 1:7509271/1‑71 TATTCCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTA < 1:6649074/41‑1 CCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCCGCATTAACCAATAATCTAAACTC < 1:2727328/63‑1 CCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTAT > 1:304085/1‑38 CCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTAT > 1:2560404/1‑38 CCACGTTTTTTTAACAGGGGAATATGCATCTGGTTTAT > 1:2512045/1‑38 CACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTTTATATTG < 1:3712252/71‑1 CACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTTTATATTG > 1:7127985/1‑71 CAAGAACAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2992771‑2992845‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattccACGTTTTTTTAACAGGGGAATATGCATCTGGTTTATCTGCATTAACCAATAATCTAAACTCTTTATATTG < AP009048/2992861‑2992792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |