| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3222373 = | 135 (1.660) | 7 (0.100) | 3/84 | NT | 5.9% | coding (1085/3093 nt) | ebgA | cryptic beta‑D‑galactosidase, alpha subunit |
| ? | AP009048 | 3222400 = | 106 (1.520) | coding (1112/3093 nt) | ebgA | cryptic beta‑D‑galactosidase, alpha subunit | |||||
ACACAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3222449‑3222373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaactCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGGCCTGTTTGT > AP009048/3222400‑3222469 ACACAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCA > 1:2836293/1‑71 ACAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:3236926/1‑70 ACAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:1504607/1‑70 CAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATC > 1:128730/1‑70 AGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATCAA < 1:6864892/71‑1 AGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACCCACGGAGTTGATATTGTGCTGCTTCATC < 1:6601737/69‑1 TTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATCAACT > 1:6072607/1‑71 AACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATCAA < 1:5357335/61‑1 ATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:1627252/1‑51 ATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:6327858/1‑51 ATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:7891639/1‑51 TTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATC < 1:5085519/48‑1 CGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCAT > 1:1075635/1‑45 AGTTGATATTGTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCG < 1:3666827/50‑1 AGTTGATATTGTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCG < 1:5036660/50‑1 ATATTGTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCGAAC < 1:2656019/48‑1 ATATTGTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCGAAC < 1:4130257/48‑1 ATTGTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCGAACGA > 1:1400039/1‑48 ttTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCGAACGATCC > 1:2966880/3‑49 ttTGCTGCTTCATCAACTCCGTGCGTACCGCTCACTACCCGAACGATCC > 1:6423681/3‑49 atgAACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA < 1:3722610/58‑1 ATCAACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA < 1:3472520/61‑1 ATCAACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA < 1:5539697/61‑1 ATCAAATCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGG > 1:265893/1‑68 TCAACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA < 1:7273346/60‑1 TCAACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA < 1:2990673/60‑1 AACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTT > 1:4909216/1‑43 AACTCCGTGCGTACAGCTCACTACCCGAACGATCCGCGTTTTT > 1:834594/1‑43 ACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGGCCTGTTT > 1:7769441/1‑71 ACTCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGGCCTGTTT > 1:3750389/1‑71 CTCCGTGCGTACCGCTCACTACCCGAACGATCCGC > 1:7234455/1‑35 TCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGGCCTGTTTGT > 1:1767628/1‑71 TCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA > 1:7073656/1‑55 TCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATA > 1:4629252/1‑55 ACACAGTTCGTAAAAACGCGGATCGTTCGGGTAGTGAGCGGTACGCACGGAGTTGATATTGTGCTGCTTCATCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3222449‑3222373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaactCCGTGCGTACCGCTCACTACCCGAACGATCCGCGTTTTTACGAACTGTGTGATATCTACGGCCTGTTTGT > AP009048/3222400‑3222469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |