| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3291382 = | 119 (1.460) | 6 (0.080) | 4/90 | NT | 5.2% | coding (187/1092 nt) | yraK | predicted fimbrial‑like adhesin protein |
| ? | AP009048 | 3291413 = | 111 (1.480) | coding (218/1092 nt) | yraK | predicted fimbrial‑like adhesin protein | |||||
CGGGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3291454‑3291382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGACAG > AP009048/3291413‑3291481 CGGGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTG > 1:888297/1‑71CGGGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTG > 1:7498375/1‑71CGGGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTG > 1:6392158/1‑71 GGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTGCT < 1:6270132/71‑1 TGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTGC < 1:5742594/66‑1 CCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTGC < 1:7300301/63‑1 AGAGCAGGAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATA > 1:470563/1‑63 CAGGAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTA < 1:5943175/38‑1 CAGGAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTA < 1:5572161/38‑1 AGGAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTAAGGCAGTTAAACTT < 1:4137884/51‑1 GAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTAAGGCAGTTAAAC > 1:5510154/1‑47 GAACAGGCGTATTGCCAGTTAGTGCTCTGCGGGTAAGGCAGTTAAAC > 1:2513242/1‑47 TGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAG < 1:11847/41‑1 TGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGG > 1:1030495/1‑37 TGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGG > 1:6279314/1‑37 GCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGA > 1:5714066/1‑69 CTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGACAG < 1:7711317/71‑1 CTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGAAAG > 1:6147291/1‑71 CGGGGCTGACCATATAGACAAGTTTAACTGCCTTACCCGCAGAGCAGGAACAGGCGTATTGCCAGTTAGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3291454‑3291382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGACAG > AP009048/3291413‑3291481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |