New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 3315184 =126 (1.550)6 (0.080) 3/86 NT 6.4% coding (686/2673 nt) infB fused protein chain initiation factor 2, IF2
?AP009048 3315223 = 66 (0.920)coding (647/2673 nt) infB fused protein chain initiation factor 2, IF2

GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3315257‑3315184
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcaGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC  >  AP009048/3315223‑3315292
                                                                                                                                                
GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTA                                                                           <  1:7587709/71‑1
  atCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATC                                                                         <  1:3236440/69‑1
                 GGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTAT                                                                          <  1:5135479/55‑1
                 GGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTAT                                                                          <  1:7710230/55‑1
                  GAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTA                                                                           >  1:1738310/1‑53
                      AAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATC                                                                         <  1:4049573/51‑1
                                     ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG                                           <  1:91553/66‑1
                                     ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG                                           <  1:3381602/66‑1
                                     ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG                                           <  1:6461404/66‑1
                                     ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG                                           <  1:7284280/66‑1
                                       AACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCT                                    >  1:2757403/1‑71
                                        ACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCT                                    <  1:1397640/70‑1
                                                                    TTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTC          >  1:1448497/1‑68
                                                                    TTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTT           >  1:659249/1‑67
                                                                      ATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTT     >  1:3547590/1‑71
                                                                       TCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTT     <  1:4195139/70‑1
                                                                        CAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTG                    >  1:550588/1‑54
                                                                         AGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC  <  1:3219716/71‑1
                                                                         AGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTA   <  1:940062/70‑1
                                                                                                                                                
GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3315257‑3315184
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcaGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC  >  AP009048/3315223‑3315292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.