| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3315184 = | 126 (1.550) | 6 (0.080) | 3/86 | NT | 6.4% | coding (686/2673 nt) | infB | fused protein chain initiation factor 2, IF2 |
| ? | AP009048 | 3315223 = | 66 (0.920) | coding (647/2673 nt) | infB | fused protein chain initiation factor 2, IF2 | |||||
GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3315257‑3315184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcaGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC > AP009048/3315223‑3315292 GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTA < 1:7587709/71‑1 atCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATC < 1:3236440/69‑1 GGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTAT < 1:5135479/55‑1 GGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTAT < 1:7710230/55‑1 GAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTA > 1:1738310/1‑53 AAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATC < 1:4049573/51‑1 ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG < 1:91553/66‑1 ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG < 1:3381602/66‑1 ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG < 1:6461404/66‑1 ATAACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACG < 1:7284280/66‑1 AACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCT > 1:2757403/1‑71 ACGCGGAACCGACTGAAGATTCCAGCGATTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCT < 1:1397640/70‑1 TTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTC > 1:1448497/1‑68 TTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTT > 1:659249/1‑67 ATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTT > 1:3547590/1‑71 TCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTT < 1:4195139/70‑1 CAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTG > 1:550588/1‑54 AGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC < 1:3219716/71‑1 AGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTA < 1:940062/70‑1 GAAGCACGTCGTATGGCGGAAGAAAACAAATGGACTGATAACGCGGAACCGACTGAAGATTCCAGCGATTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3315257‑3315184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcaGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTAC > AP009048/3315223‑3315292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |