| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3384262 = | 163 (2.000) | 7 (0.100) | 4/88 | NT | 5.4% | intergenic (‑139/‑296) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/DNA‑binding transcriptional dual regulator, L‑arginine‑binding |
| ? | AP009048 | 3384285 = | 101 (1.380) | intergenic (‑162/‑273) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/DNA‑binding transcriptional dual regulator, L‑arginine‑binding | |||||
TTGTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3384335‑3384262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacgTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAGCC > AP009048/3384285‑3384354 TTGTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGAT < 1:6920652/70‑1TTGTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGAT < 1:4047444/70‑1 GTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTA < 1:7819634/70‑1 GTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTA < 1:4451629/70‑1 GTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATT < 1:843758/69‑1 TCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACG < 1:5680418/71‑1 TCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACG < 1:2506952/71‑1 TCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTAC < 1:4004153/70‑1 CTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACG > 1:7267590/1‑64 GTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGAT < 1:6081711/58‑1 GCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTA > 1:3351593/1‑49 GCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTA > 1:7375209/1‑49 GCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTA > 1:1206505/1‑49 ATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGAT > 1:386255/1‑41 ATGCATAAGCGACTGTTAATTACATAAGTTAGGTTCCTGAT > 1:3267808/1‑41 ACGTAAGTTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTA < 1:3859868/48‑1 ACGTAAGTTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTA < 1:7925409/48‑1 GTAAGTTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTAGC > 1:5234505/1‑48 GTAAGTTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTAGC > 1:556826/1‑48 AAGTTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAA > 1:2304954/1‑71 TTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATAT < 1:3503388/71‑1 TTAGGTTCCTGATTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATAT < 1:1415935/71‑1 TACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGG < 1:7484137/46‑1 ACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAG > 1:6973669/1‑71 ACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGT > 1:5194259/1‑46 ACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGT > 1:1350005/1‑46 CGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCA > 1:3205971/1‑69 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAGCC < 1:7255982/71‑1 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAAC < 1:5226536/40‑1 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAAC < 1:687797/40‑1 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAAC < 1:7926326/40‑1 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCC > 1:5601454/1‑37 GTAATTAACAGTCGCTTATGCATTAGCGCAACATTCC > 1:5514019/1‑37 TTGTCACCACCTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3384335‑3384262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacgTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAGCC > AP009048/3384285‑3384354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |