| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3462865 | 113 (1.390) | 6 (0.080) | 3/86 | NT | 6.1% | coding (735/966 nt) | birA | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase and DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
| ? | AP009048 | = 3462891 | 84 (1.180) | coding (709/966 nt) | birA | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase and DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding | |||||
TTATCCAGCTTTTCCCAGCGCGACAGATAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3462791‑3462865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaatACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTGGCAC < AP009048/3462891‑3462822 TTATCCAGCTTTTCCCAGCGCGACAGATAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACG > 1:7545551/1‑71 CAGCTTTTCCCAGCGCGACAGATAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGTAAT > 1:6282352/1‑70 AGATAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGTAATACGTTGGCGGCCATGCTAA > 1:4021435/1‑70 TAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGTAA > 1:5257250/1‑47 ATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGT > 1:7872255/1‑35 GAGTTCCAACGCAGCACGTAATACGTTGGCGGCCATGCTAATACGTGAAT < 1:1783089/50‑1 GAGTTCCAACGCAGCACGTAATACGTTGGCGGCCATGCTAATACGTGAAT < 1:5144460/50‑1 AACGCAGCACGTAATACGTTGGCGGCCATGCTAATACGTGAATTAC > 1:2292804/1‑46 AACGCAGCACGTAATACGTTGGCGGCCATGCTAATACGTGAATTAC > 1:3488072/1‑46 AACGCAGCACGTAATACGTTGGCGGCCATGCTAATACGTGAATTA > 1:4851337/1‑45 GTAATACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTG < 1:6593693/71‑1 TAATACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTGG < 1:825866/71‑1 ATACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTGGCA < 1:4423877/71‑1 ATACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGAT < 1:3642631/66‑1 ATACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTT > 1:2847264/1‑52 TACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTGGCAC > 1:7102145/1‑71 TTATCCAGCTTTTCCCAGCGCGACAGATAAGGTGCCAATCCTTCTTGTTCGAAGAGTTCCAACGCAGCACGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3462791‑3462865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaatACGTTGGCGGCCATGCTAATACGTGAATTACGTGCTGCGTTGGAACTCTTCGAACAAGAAGGATTGGCAC < AP009048/3462891‑3462822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |