| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3473734 = | 93 (1.140) | 7 (0.100) | 5/84 | NT | 9.4% | coding (324/1101 nt) | trmA | tRNA (uracil‑5‑)‑methyltransferase |
| ? | AP009048 | 3473761 = | 56 (0.800) | coding (351/1101 nt) | trmA | tRNA (uracil‑5‑)‑methyltransferase | |||||
GACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3473810‑3473734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaatcaGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCCTGCGC > AP009048/3473761‑3473830 GACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGG > 1:231273/1‑71 ACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGT < 1:4333266/71‑1 ACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGG > 1:1615822/1‑70 CACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAAT < 1:430409/70‑1 ACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA < 1:1898563/71‑1 ACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA < 1:1915847/71‑1 ACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA < 1:435819/71‑1 CTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA < 1:7773856/70‑1 CTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA < 1:7035363/70‑1 TCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGT < 1:3593333/64‑1 CATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGT < 1:4503365/60‑1 GCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAA > 1:2492945/1‑41 GGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTA < 1:7599410/36‑1 TGATTACTCAGTGTAGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGT > 1:3084780/1‑71 CTCAGTGTAGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGC < 1:4609300/53‑1 TCAGTGTAGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGC < 1:7714319/52‑1 CAGTGTAGTGAGGTAATCAGGCGGTGGTTTCCCTG > 1:1855301/1‑35 GTAGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTG < 1:4945731/60‑1 AGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGC > 1:7585881/1‑60 AGTGAGGTAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGC > 1:762753/1‑60 TAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCC > 1:4622880/1‑71 TAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCC < 1:3273377/71‑1 TAATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCC < 1:2330923/71‑1 AATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGT > 1:4177314/1‑49 AATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTG > 1:5840232/1‑39 AATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTG > 1:724350/1‑39 AATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTG > 1:7290827/1‑39 ATCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCCTG < 1:4493010/71‑1 TCAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCA < 1:329345/54‑1 CAGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAG > 1:2587069/1‑58 AGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCCTGCGC < 1:732550/71‑1 GACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3473810‑3473734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaatcaGGCGGTGGTTTCCCTGCTATACCATAAGAAGCTGGATGATGAGTGGCGTCAGGAAGCGGAGGCCCTGCGC > AP009048/3473761‑3473830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |