| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3474300 | 63 (0.770) | 6 (0.090) | 3/82 | NT | 11.5% | coding (890/1101 nt) | trmA | tRNA (uracil‑5‑)‑methyltransferase |
| ? | AP009048 | = 3474340 | 40 (0.590) | coding (930/1101 nt) | trmA | tRNA (uracil‑5‑)‑methyltransferase | |||||
AGGCGATGAATGGTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3474225‑3474300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accattttCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT < AP009048/3474340‑3474274 AGGCGATGAATGTTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAAC > 1:3698058/1‑70 GGCGATGAATGGTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCA > 1:2196817/1‑71 ATGAATGGTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCATTTT < 1:7165656/71‑1 ATGAATGGTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCATTTT < 1:1947340/71‑1 ACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCATT > 1:918218/1‑47 CTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAA > 1:2802417/1‑37 ATCGACTTAAAGAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCG < 1:2058192/64‑1 ATCGACTTAAAGAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCG < 1:2067171/64‑1 ATCGACTTAAAGAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCG < 1:6747689/64‑1 TCGACTTAAAGAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCG < 1:3370731/63‑1 AAAGAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAA < 1:843231/69‑1 GAGTTATCAGTGCGAAACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGG < 1:1189161/71‑1 ACCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACT > 1:7714952/1‑71 CCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTC > 1:7541936/1‑71 CATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTG < 1:7602154/63‑1 ATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTT < 1:3513770/71‑1 ATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGAC < 1:5483619/44‑1 ATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGA > 1:4937275/1‑36 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT < 1:5780034/71‑1 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAA > 1:3347392/1‑65 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAA > 1:679611/1‑65 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGAT < 1:4134780/63‑1 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGAT < 1:7166075/63‑1 TTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCG > 1:5736105/1‑56 TTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCT < 1:4893082/68‑1 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT > 1:990935/1‑69 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT > 1:6769928/1‑69 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT > 1:1720772/1‑69 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT > 1:1711056/1‑69 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTT > 1:4407945/1‑68 TTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGAC > 1:4531468/1‑41 AGGCGATGAATGGTGTGCGCGAGTTTAACCGCCTGCAAGGGATCGACTTAAAGAGTTATCAGTGCGAAACCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3474225‑3474300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accattttCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTT < AP009048/3474340‑3474274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |