New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 3649639	89 (1.090)	9 (0.130)	3/86	NT	10.3%	coding (841/1197 nt)	hemY	predicted protoheme IX synthesis protein
	?	AP009048	= 3649652	79 (1.110)					coding (854/1197 nt)	hemY	predicted protoheme IX synthesis protein

AGCCGGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3649564‑3649639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgataATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTACCT  <  AP009048/3649652‑3649583                                                                                                                                                    AGCCGGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCA                                                                             >  1:2787886/1‑71  GCCGGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCAT                                                                            <  1:2072554/71‑1    CGGAAAACGCGTCATCAGGTAGCGTTGCATGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:7457541/71‑1    CGGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:3439711/71‑1     GGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          >  1:4492741/1‑70      GAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATA                                                                        <  1:4108859/71‑1           CGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:3978499/64‑1           CGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:6088947/64‑1                CATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          >  1:558184/1‑59                        AGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          >  1:3444782/1‑51                          CGTTGCATGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCAGTATCATG                                                    <  1:7125507/71‑1                          CGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCAGTATCATG                                                    <  1:3350404/71‑1                          CGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCAGTATCATG                                                    <  1:1072306/71‑1                            TTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:6415848/47‑1                            TTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGA                                                                          <  1:808683/47‑1                                              GAACATCTTATTGAATGTGACGATCATGATAATTTGCTG                                                                >  1:3590575/1‑39                                              GAACATCTTATTGAATGTGACGATCATGATAATTTGCTG                                                                >  1:3798246/1‑39                                                ACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCA                                                            >  1:2224556/1‑41                                                ACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCA                                                            >  1:1540773/1‑41                                                ACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCA                                                            >  1:7686196/1‑41                                                ACATCTTATTGAATGTGACGATCATGATAATTTGCTGGGCA                                                            >  1:5346902/1‑41                                                                       ATGATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGC       >  1:6832271/1‑71                                                                        TGATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGC       >  1:3920345/1‑70                                                                        TGATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGC       >  1:483438/1‑70                                                                        TGATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGC       >  1:3586592/1‑70                                                                        TGATAATTTGCTGGGCAGTATCATGATCGTCACAT                                          <  1:1381297/35‑1                                                                         GATAATTTTCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTC                            <  1:7316090/48‑1                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTAC    <  1:814198/71‑1                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATT                     >  1:3634173/1‑54                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCAT                      >  1:4670817/1‑53                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTC                            >  1:6944914/1‑47                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTC                                        >  1:5855983/1‑35                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTC                                        >  1:7632130/1‑35                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTC                                        >  1:210936/1‑35                                                                          ATAATTTGCTGGGCAGTATCATGATCGTCACATTC                                        >  1:875853/1‑35                                                                           TAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTACC   <  1:5906633/71‑1                                                                           TAATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTACC   <  1:2696261/71‑1                                                                            AATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTACCT  >  1:5826661/1‑71                                                                                                                                                    AGCCGGAAAACGCGTCATCAGGTAGCGTTGCAGGTGGCAATGGCGGAACATCTTATTGAATGTGACGATCATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3649564‑3649639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgataATTTGCTGGGCAGTATCATGATCGTCACATTCAATAAGATGTTCCGCCATTGCCACCTGCAACGCTACCT  <  AP009048/3649652‑3649583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.