| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3764491 = | 102 (1.250) | 6 (0.090) | 3/82 | NT | 7.5% | coding (487/657 nt) | yidX | predicted lipoproteinC |
| ? | AP009048 | 3764520 = | 63 (0.920) | coding (458/657 nt) | yidX | predicted lipoproteinC | |||||
CCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3764568‑3764491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggattGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGCGTT > AP009048/3764520‑3764585 CCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC < 1:7253345/71‑1 CTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACA > 1:530886/1‑71 CTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACA > 1:7099228/1‑71 TGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT > 1:6398286/1‑71 TGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG < 1:6483674/71‑1 TGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT < 1:1655555/69‑1 GTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT < 1:3708916/71‑1 TCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT < 1:4236712/63‑1 TACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC > 1:5981018/1‑52 ACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA > 1:1244554/1‑56 GTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG < 1:54052/50‑1 GTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC > 1:2393214/1‑46 ACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC < 1:5860154/43‑1 TGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG < 1:2787198/45‑1 CAATCCATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGT < 1:4264682/66‑1 AATCCATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTG > 1:6552291/1‑67 AATCCATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTT > 1:969466/1‑66 AATCCATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTT > 1:4600807/1‑66 AATCCATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTT > 1:3096700/1‑66 ATGAGAAAAATAAAAACATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGG > 1:1156296/1‑52 ATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGCG > 1:4000462/1‑71 ATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGC < 1:5675233/70‑1 ATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATG < 1:1361917/69‑1 ATGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAAT < 1:1694462/68‑1 TGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAAGACCACAGGCAAAACCATAAT < 1:6713243/67‑1 TGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGT < 1:165519/40‑1 TGGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGT < 1:7666212/40‑1 GGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGCGTT > 1:1903239/1‑71 GGATTGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGCGTT > 1:1311075/1‑71 TGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGC > 1:4749586/1‑51 TGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGC > 1:4246175/1‑51 TGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGC > 1:897827/1‑51 CCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3764568‑3764491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggattGTGCCTTTTAGGTTTTCCAGTGACCTGGTACAGTGTTGAACACCACAGGCAAAACCATAATGCGTT > AP009048/3764520‑3764585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |