| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3790746 = | 84 (1.030) | 8 (0.110) | 4/86 | NT | 10.5% | coding (468/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| ? | AP009048 | 3790777 = | 62 (0.870) | coding (499/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA | |||||
CAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3790820‑3790746‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGGTACT > AP009048/3790777‑3790846 CAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAA < 1:6371947/71‑1 TTGATTGGCTGAGAAACCAGTGACGGATCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACAC < 1:7574337/71‑1 TTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACAC > 1:6437901/1‑71 TGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACAC > 1:3734834/1‑70 GATTGGCTGAGAAACCAGTGACGGACCGAGCGTCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACAC > 1:4921206/1‑69 GATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACACC < 1:1381139/70‑1 ATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACAC > 1:4416490/1‑68 GACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGACAGAACA > 1:295314/1‑49 GTGTTATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCTGTCCGTCACTG < 1:1458092/54‑1 GTGTTATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTG < 1:7004064/54‑1 TGTTATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCT < 1:2042169/59‑1 TGTTATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCT < 1:6503253/59‑1 ATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTT > 1:4944161/1‑53 ATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTT > 1:5809952/1‑53 ATTGGCGAGATAGTGCCAGAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTT > 1:1847807/1‑53 GAGATAGTGCCAGAACACCAGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGC < 1:7216317/71‑1 ACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGG > 1:5169159/1‑71 ACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGG > 1:1917682/1‑71 CTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGGTACT > 1:4942017/1‑71 CTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGGTACT > 1:6456665/1‑71 CTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATC < 1:3699657/40‑1 CAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3790820‑3790746‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATCAACTGGCGCGGGCGACATCTGGTCTGGTACT > AP009048/3790777‑3790846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |