| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3815064 = | 101 (1.240) | 5 (0.070) | 4/90 | NT | 5.3% | coding (142/2082 nt) | recG | ATP‑dependent DNA helicase |
| ? | AP009048 | 3815082 = | 87 (1.160) | coding (124/2082 nt) | recG | ATP‑dependent DNA helicase | |||||
AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3815136‑3815064‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCTG > AP009048/3815082‑3815150 AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG < 1:1949133/71‑1AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG > 1:6753568/1‑71AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG > 1:5254710/1‑71AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACATTCCCCTGCGCTACGAAGATCG > 1:1467606/1‑71 AACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG > 1:1491587/1‑70 ACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG > 1:2494309/1‑69 GCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCGC > 1:5489457/1‑66 TCTACTCTTACACCTTGCCCTGCGCTACGAAGATCG > 1:6114019/1‑36 TCTACTCTTACACCTTCCCCTGCGCTACGAAGATCG > 1:7495145/1‑36 CTTCCCCTGCGCTACGAAGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGT < 1:7757944/64‑1 CCCTGCGCTACGAAGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTT < 1:867479/66‑1 CCTGCGCTACGAAGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGC < 1:163052/69‑1 CCTGCGCTACGAAGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGT > 1:4939655/1‑59 CCTGCGCTACGAAGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGT > 1:645097/1‑59 AGATCGCAGGGGAAGGTGTAAGAGTAGATCCTGCACG > 1:3522959/1‑37 CGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAG < 1:2227703/56‑1 CGCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCG > 1:3862568/1‑52 GCAGGGGAAGGTGTAATAGTAGATCCTGCACGGTATGC < 1:1386019/38‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCT < 1:3073963/71‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCT < 1:2873158/71‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCT < 1:2310965/71‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAG < 1:3839946/55‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTT < 1:4497867/48‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTT < 1:6908388/48‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGC < 1:3480951/38‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGC < 1:4232982/38‑1 GCAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGC < 1:4174730/38‑1 CAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCTG > 1:2909209/1‑71 CAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCT > 1:2147883/1‑70 CAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTT > 1:5016840/1‑56 CAGGGGAAGGTGTAAGAGTAGATCCTGCACGGTAT < 1:4743160/35‑1 AAACTGGCGAAAATCAACCTGCATACCGTGCAGGATCTACTCTTACACCTTCCCCTGCGCTACGAAGATCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3815136‑3815064‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaGGGGAAGGTGTAAGAGTAGATCCTGCACGGTATGCAGGTTGATTTTCGCCAGTTTGTTACTAAGTGCTG > AP009048/3815082‑3815150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |