| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3833166 | 60 (0.740) | 7 (0.100) | 4/86 | NT | 12.5% | coding (850/1035 nt) | rfaQ | lipopolysaccharide core biosynthesis protein |
| ? | AP009048 | = 3833181 | 45 (0.630) | coding (865/1035 nt) | rfaQ | lipopolysaccharide core biosynthesis protein | |||||
GCGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3833094‑3833166‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattctCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGC < AP009048/3833181‑3833112 GCGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTAT > 1:1515364/1‑70 CGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTC < 1:5990511/71‑1 CGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTC < 1:6495240/71‑1 CGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTC < 1:7245949/71‑1 CGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTC < 1:7590246/71‑1 GCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT < 1:1220810/71‑1 GCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT > 1:7366206/1‑71 GCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT < 1:262871/71‑1 GCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTC < 1:2788576/70‑1 AGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT > 1:6553745/1‑56 GTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTA < 1:2430909/45‑1 GTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTA < 1:277241/45‑1 GTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTA < 1:1691273/45‑1 GTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTA < 1:3700741/45‑1 GTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTA < 1:483055/45‑1 TGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTAT < 1:2281734/45‑1 GAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATT > 1:3239066/1‑45 AAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCTCGGTCCAGGGACGCCAGAATACG > 1:2291037/1‑69 AAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCTCGGTCCAGGGACGCCAGAATACG > 1:4484127/1‑69 AAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTAT > 1:2240139/1‑42 AAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTAT > 1:1998304/1‑42 GCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCTCGGTCCA > 1:5021963/1‑48 TCATTAGTCTATTTGGTGCAACGGATCACGTATTCTCGGTCCAGGGACGCCAGA < 1:7898180/54‑1 CATTAGTCTATTTGGTGCAACGGATCACGTATTCTCGGTCCAGGGACGCCAGA < 1:1857429/53‑1 CAACGGATCACGTATTCTCGGTCCAGGGACGCCAG < 1:5126563/35‑1 CAACGGATCACGTATTCTCGGTCCAGGGACGCCAG < 1:920746/35‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTA < 1:3718546/53‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTA < 1:6331090/53‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATA < 1:5338280/48‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATA < 1:3368863/48‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATA < 1:7344837/48‑1 TATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATA < 1:2758243/48‑1 TTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCTTTTTAACTGC > 1:5243082/1‑71 TTCTCGGTCCAGGGACGCCAGAATACGTGATCCGT > 1:6957322/1‑35 TCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAAT < 1:259153/52‑1 TCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAAT < 1:1495184/52‑1 TCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGC > 1:3077570/1‑71 TCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTC < 1:5069437/63‑1 GCGCCGGGACATATTGCAGCGGCAGTGAAAACGCCAGTCATTAGTCTATTTGGTGCAACGGATCACGTATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3833094‑3833166‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattctCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGC < AP009048/3833181‑3833112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |