| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3834584 | 82 (1.010) | 7 (0.100) | 6/88 | NT | 8.8% | coding (120/798 nt) | rfaP | kinase that phosphorylates core heptose of lipopolysaccharide |
| ? | AP009048 | = 3834597 | 71 (0.970) | coding (133/798 nt) | rfaP | kinase that phosphorylates core heptose of lipopolysaccharide | |||||
GATGCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3834510‑3834584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctttTCCCGGACAGTTCAAAGCGTAATGTACGACGAGTCTCCAGTTCACGAAAGACCTCGCCGTTCAGTTTT < AP009048/3834597‑3834530 GATGCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACG > 1:7100580/1‑71 TGCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCT < 1:2418549/71‑1 TGCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCT < 1:6550639/71‑1 GCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCT < 1:266531/70‑1 GCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCT < 1:6247436/70‑1 CTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTT < 1:7248149/70‑1 AAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAAG < 1:3219467/71‑1 GGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAAGCGT < 1:350618/65‑1 GCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAA < 1:6527425/60‑1 CGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAAGCGTAA > 1:3281526/1‑65 GAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAAGC > 1:789767/1‑60 GACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAA > 1:1942029/1‑38 GACTCGTCGTACATTACGCTTTTCCCGGACAGTTCAAA > 1:5504446/1‑38 GCTTTTCCCGGACAGTTCAAAGCGTAATGTACGACGAGTCTCCAGTTCACGAAAGACCTCGCCGTTC < 1:2886328/67‑1 GCTTTTCCCGGACAGTTCAAAGCGTAATGTACGACGA > 1:978541/1‑37 TTCCCGGACAGTTCAAAGCGTAATGTACGACGAGTCTCCAGTTCACGAAAGACCTCGCCGTTCAGTTTT < 1:4231792/69‑1 GATGCTTTTGCAGAGGTCAAAAAACTGAACGGCGAGGTCTTTCGTGAACTGGAGACTCGTCGTACATTACGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3834510‑3834584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctttTCCCGGACAGTTCAAAGCGTAATGTACGACGAGTCTCCAGTTCACGAAAGACCTCGCCGTTCAGTTTT < AP009048/3834597‑3834530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |