| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4037963 | 107 (1.310) | 10 (0.140) | 3/86 | NT | 11.0% | coding (296/669 nt) | ftsE | predicted transporter subunit |
| ? | AP009048 | = 4037980 | 68 (0.950) | coding (313/669 nt) | ftsE | predicted transporter subunit | |||||
TTCCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4037888‑4037963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgataaTCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATCATGCC < AP009048/4037980‑4037911 TTCCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTAC < 1:534723/71‑1TTCCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTAC < 1:6742719/71‑1 TCCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTAC > 1:1492678/1‑70 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:1217064/1‑71 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:5358022/1‑71 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:4824435/1‑71 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:6484110/1‑71 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:4045511/1‑71 CCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGA > 1:3991637/1‑71 CGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGAT < 1:7084212/71‑1 CGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGAT < 1:6201554/71‑1 GTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTTTCTACGATA < 1:607554/71‑1 TTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGAT < 1:3030218/69‑1 CGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAA > 1:5192262/1‑65 CCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAA > 1:5592043/1‑60 GATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCACGTTATCG > 1:2863716/1‑71 GATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCACGTTATCG > 1:151707/1‑71 GATTTTCCAGGATCACCATCTACTGATGGACCGTACTATCTACGATAATCAGCGGGATCGCCACGTTATCG > 1:3240145/1‑71 TCTACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCC < 1:4677942/44‑1 TCTACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCC < 1:7471830/44‑1 TCTACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCC < 1:372163/44‑1 TACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCAC > 1:6424835/1‑44 TACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCAC > 1:6257060/1‑44 TACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCAC > 1:2837079/1‑44 TACTGATGGACCGTACTGTCTACGATAATCAGCGGGATCGCCAC > 1:374247/1‑44 CGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATC < 1:1240124/71‑1 CGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATC < 1:3580038/71‑1 CGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATG < 1:795441/55‑1 CGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAG > 1:4417866/1‑52 gtTAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCA < 1:4516994/42‑1 GATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCA < 1:4842813/44‑1 ATAATCAGCGGGATCGCCACGTTATCGTAGACAGTAGGGTCCATCAGTAGATGGTGATCCTGGAAAATCAT < 1:7446640/71‑1 TAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATCAT > 1:496374/1‑70 AATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATCATGC > 1:2744649/1‑71 AATCAGCGGGATCGCCACGTTATCGTAGACAGTACGG < 1:4688253/37‑1 AATCAGCGGGATCGCCACGTTATCGTAGACAGTACGG < 1:4674877/37‑1 AATCAGCGGGATCGCCACGTTATCGTAGACAGTACGG < 1:1047936/37‑1 ATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATCATGCC < 1:7144387/71‑1 TTCCGTTTCTGCGCCGCCAGATTGGCATGATTTTCCAGGATCACCATCTACTGATGGACCGTACTGTCTACGATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4037888‑4037963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgataaTCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCATCAGTAGATGGTGATCCTGGAAAATCATGCC < AP009048/4037980‑4037911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |