| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4115489 = | 111 (1.360) | 8 (0.100) | 3/92 | NT | 7.0% | coding (2057/2553 nt) | mrcA | fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase |
| ? | AP009048 | 4115509 = | 107 (1.400) | coding (2037/2553 nt) | mrcA | fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase | |||||
CGCACCGCACGTCATCAACACTCCGCTGGCATTCCTGATTAAGAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4115536‑4115489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTGCC > AP009048/4115509‑4115578 CGCACCGCACGTCATCAACACTCCGCTGGCATTCCTGATTAAGAGT > 1:2569197/1‑46CGCACCGCACGTCATCAACACTCCGCTGGCATTCCTGATTAAGAGT > 1:940521/1‑46 GGCATTCCTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTGCGTACTC < 1:1750778/54‑1 GGCATTCCTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTGCGTACTC < 1:5780935/54‑1 GGCATTCCTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCCGTGCGTACTC < 1:1377222/54‑1 TCCTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGG < 1:1108218/40‑1 CTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTG > 1:2371068/1‑40 CTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTG > 1:3861701/1‑40 CTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTG > 1:6012908/1‑40 CTGATTAAGAGTGCCAGCGGAGTGTTGATGACGTGCGGTG > 1:7859249/1‑40 TGCCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTG > 1:2838667/1‑71 CCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTGCC > 1:1665838/1‑71 CCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTGCC > 1:2386520/1‑71 CCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTGC < 1:3712181/70‑1 CGCACCGCACGTCATCAACACTCCGCTGGCATTCCTGATTAAGAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4115536‑4115489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCAGCGGAGTGTTGATGACGTGCGGTGCGTACTCCTGCGCGCCAGTCTTCGCCACTAACGCCTGATTTGCC > AP009048/4115509‑4115578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |