| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4132585 = | 86 (1.060) | 3 (0.040) | 3/82 | NT | 3.7% | coding (760/879 nt) | php | predicted hydrolase |
| ? | AP009048 | 4132618 = | 83 (1.220) | coding (793/879 nt) | php | predicted hydrolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4132662‑4132585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccaccTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGAAAATCCCT > AP009048/4132618‑4132687 CACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:3163047/71‑1CACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:6971747/71‑1 ACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT > 1:2562792/1‑70 ATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAAC > 1:5441082/1‑71 GGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCA < 1:7623509/70‑1 GCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACC < 1:2113673/71‑1 CTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATA < 1:5217443/59‑1 CGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:5101431/43‑1 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAA > 1:578135/1‑42 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAA > 1:3046784/1‑42 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAA > 1:3963381/1‑42 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAA > 1:1559586/1‑42 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:7001858/40‑1 AATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:4785986/40‑1 TTGCGCAATAAAGGTGGTTAGTAAATAGTCATAGCCAT < 1:2135281/38‑1 AAGGTGGTTAGTAAATAGTCATAGCCATAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAG > 1:1310804/1‑71 TGGTTAGTAAATAGTCATAGCCATAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCG < 1:875508/71‑1 GGTTAGGAAATAGTCATAGCCATAACCACCTTTATTCCGCAATTGC > 1:128/1‑46 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGA > 1:6267994/1‑70 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGT < 1:2872744/58‑1 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGT < 1:4151852/58‑1 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGT < 1:1923979/58‑1 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGG > 1:6619629/1‑54 TAACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGG > 1:7290107/1‑54 AACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGA < 1:1227016/48‑1 AACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGA < 1:2724335/48‑1 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGAAAA > 1:1425862/1‑71 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGA < 1:4471108/47‑1 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTC < 1:3529879/40‑1 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATT < 1:3676388/35‑1 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATT < 1:190460/35‑1 ACCACCTTTATTCCGCAATTGCGCCAGTCAGGATT < 1:1236561/35‑1 CACCTTTATTCCGCAATTGCGCCAGTCAGGATTAAGTCAGGCCGATGTGGATGTGAT > 1:383719/1‑57 ACCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGAAAATCC < 1:3780885/71‑1 CCTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGT < 1:2385867/52‑1 CTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGAAAATCCCT > 1:7291787/1‑71 CTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATG > 1:1958138/1‑55 CACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4132662‑4132585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccaccTTTATTCCGCAATTGCGCCAGTCAGGATTCAGTCAGGCCGATGTGGATGTGATGTTACGTGAAAATCCCT > AP009048/4132618‑4132687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |