| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4202598 = | 136 (1.670) | 10 (0.140) | 4/84 | NT | 8.8% | coding (1301/1377 nt) | trkA | NAD‑binding component of TrK potassium transporter |
| ? | AP009048 | 4202647 = | 90 (1.290) | coding (1252/1377 nt) | trkA | NAD‑binding component of TrK potassium transporter | |||||
TTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4202673‑4202598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacgtCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCGAC > AP009048/4202647‑4202716 TTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGAT < 1:72046/71‑1TTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGAT > 1:3173012/1‑71 TATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGAT > 1:2913900/1‑70 TATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTG‑CAATGACAATCTGCGCATTGAGCAAGGCGATCA > 1:7780543/1‑71 GGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACG > 1:82475/1‑70 GGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACG > 1:7306053/1‑70 GAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT < 1:7475712/70‑1 GAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT < 1:5017180/70‑1 ACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT < 1:3699754/60‑1 CGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCC > 1:2301181/1‑70 CGTGATGATTGACAATGACAATCTGCGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCC > 1:7855991/1‑70 ATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCCAATAATCG < 1:3617311/71‑1 ATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCCAATAATCG < 1:6425965/71‑1 ATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT < 1:1867785/41‑1 TTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCCAATAATCG < 1:6435183/70‑1 AATGACAATCTGCGCATTGAGCAA‑TC‑ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGC > 1:7485142/1‑71 AATGACAATCTGCGCATTGAGCAA‑TC‑ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGC > 1:2719215/1‑71 AATGACAATCTGCGCATTGAGCAA‑TC‑ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGG > 1:5515957/1‑70 CGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGC < 1:3888985/67‑1 CGCATTGAGCAAGGCGATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGC < 1:5160506/67‑1 ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTT > 1:2831927/1‑58 ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGAT > 1:476921/1‑56 ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGAT > 1:6321693/1‑56 ATCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTC > 1:5178825/1‑40 TCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTG > 1:6395667/1‑71 TCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTG > 1:864337/1‑71 TCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTG > 1:5707486/1‑71 TCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTG < 1:1722367/71‑1 TCACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGAT < 1:7651346/55‑1 ACGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCC < 1:6077327/71‑1 CGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCG < 1:528403/71‑1 CGTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCGTGATTTCGTCAATGACTCTGC < 1:3574212/69‑1 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCGA > 1:4995509/1‑71 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGG > 1:6945060/1‑39 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGG > 1:6147575/1‑39 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTG > 1:1329166/1‑38 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTC > 1:3076566/1‑35 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTC > 1:1947940/1‑35 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTC > 1:1916934/1‑35 GTCGTTTCCACGTACCACCGCTCCAATAATCGTTC > 1:1857006/1‑35 TCGTTTCCACTTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATT < 1:5232790/51‑1 TCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCGAC < 1:4867185/71‑1 TCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCGAC < 1:2476135/71‑1 TCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTC < 1:3507989/56‑1 TCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATT < 1:561195/51‑1 TCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTA < 1:6034783/43‑1 TTATTGGAGCGGTGGTACGTGGAAACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4202673‑4202598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacgtCGTTTCCACGTACCACCGCTCCAATAATCGTTCCTGGCGGTAGCTTGATTTCGTCAATGACTCTGCCGAC > AP009048/4202647‑4202716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |