| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | AP009048 | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP009048 | 4310363–4311560 | 4311561 | 2–1199 | 128 [0] | [0] 130 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4310362 | 0 (0.000) | 103 (1.380) | 50/90 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | AP009048 | 4311562 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
Only 100 of 135 total aligned reads displayed.
TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4310290‑4310362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA > AP009048/4311562‑4311631 TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTT < 1:5977868/70‑1 TATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG < 1:2119956/71‑1 TACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAA < 1:6800929/71‑1 TACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA < 1:3737394/66‑1 ACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAAC > 1:5878212/1‑71 TGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT > 1:5696108/1‑71 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:5819407/1‑71 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTG > 1:5828913/1‑70 CGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:5428086/1‑70 TTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA < 1:5920573/71‑1 TTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA < 1:2604409/71‑1 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA > 1:746676/1‑70 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA > 1:229471/1‑70 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA > 1:1369297/1‑70 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCA > 1:4768736/1‑69 GCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAA < 1:3003392/70‑1 GCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAA < 1:57394/70‑1 CACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTT < 1:783661/48‑1 ACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC < 1:3549278/71‑1 CAGCGGGTCATTGCGCTAGTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACG < 1:3434967/71‑1 CAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACG < 1:7109275/71‑1 AGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT > 1:193389/1‑71 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:2999329/71‑1 GGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA < 1:4965195/71‑1 tGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAA > 1:6972718/2‑61 GGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT < 1:4146638/71‑1 GGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTT < 1:1334903/42‑1 CATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCG > 1:3993764/1‑71 CATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCG > 1:3629235/1‑71 CATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAA > 1:4671538/1‑59 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCC < 1:3228443/71‑1 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGC > 1:1140933/1‑69 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:1894002/1‑51 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:1991929/1‑51 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:7445284/48‑1 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCA < 1:2651468/70‑1 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCA < 1:3824255/70‑1 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCA < 1:3246002/70‑1 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAA > 1:5303241/1‑57 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAA > 1:3026194/1‑57 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:6608620/1‑62 GCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCA < 1:5608038/50‑1 CTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:2634069/59‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCTCAGAACTGTGGCAAAAAACG < 1:4433194/53‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC < 1:63663/71‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC > 1:6481149/1‑71 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTG < 1:2740814/70‑1 CTGTGACAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTG < 1:5355110/70‑1 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT > 1:7483924/1‑52 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTG > 1:4844282/1‑70 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT < 1:6013527/69‑1 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAA < 1:1337409/45‑1 GCCAACGTTTTACTCATGGGGCTTTAGGACAGAACTGTGGCAAAAAACGTTGA > 1:7401168/1‑53 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAC > 1:7841167/1‑71 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:5996301/51‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:839111/51‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:1182924/51‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAA > 1:1772893/1‑45 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAA > 1:2383728/1‑45 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAA > 1:3488067/1‑45 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 1:6672164/1‑71 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:7633777/1‑71 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:7057211/1‑69 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:7769326/1‑69 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:4309067/1‑47 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAC < 1:4883910/65‑1 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT < 1:7315642/43‑1 TTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:5255132/43‑1 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:3573532/1‑71 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT > 1:1765346/1‑45 TACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG < 1:5423872/70‑1 TACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG < 1:1658505/70‑1 TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAAT < 1:3021606/49‑1 TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:4140263/48‑1 CATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT < 1:37535/54‑1 CATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT < 1:7298460/54‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:5171367/36‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:7522623/36‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:4319770/36‑1 TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA > 1:6571353/1‑70 TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA > 1:1677821/1‑70 TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:4736127/35‑1 TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:7028258/35‑1 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA > 1:3692552/1‑69 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:4690753/44‑1 GGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAC < 1:6828080/53‑1 TTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT < 1:7609392/41‑1 TTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT < 1:2986533/41‑1 TTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT < 1:2136264/41‑1 TTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT < 1:5823596/41‑1 TAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG < 1:2051948/69‑1 TAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > 1:4417146/1‑69 TAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG < 1:1638120/69‑1 TAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGC > 1:805437/1‑55 AGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTG > 1:5435653/1‑41 GCACAGTACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT > 1:3077844/1‑42 GCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA < 1:3305638/71‑1 GCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > 1:2121672/1‑67 GCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT > 1:6105254/1‑42 GCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT > 1:1265139/1‑42 TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4310290‑4310362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA > AP009048/4311562‑4311631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |