| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4315115 = | 157 (1.930) | 4 (0.060) | 3/84 | NT | 3.2% | coding (544/1533 nt) | alsA | fused D‑allose transporter subunits and ATP‑binding components of ABC superfamily |
| ? | AP009048 | 4315145 = | 106 (1.520) | coding (514/1533 nt) | alsA | fused D‑allose transporter subunits and ATP‑binding components of ABC superfamily | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4315189‑4315115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtggGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGCT > AP009048/4315145‑4315214 CCAAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAG < 1:7572352/71‑1 CAAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGG > 1:5038500/1‑71 CAAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAG > 1:878062/1‑68 AAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGT > 1:7094690/1‑71 AAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGT > 1:4055686/1‑71 AAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG > 1:6217595/1‑71 AAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG > 1:3089857/1‑71 AAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG < 1:4834406/71‑1 AACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTGG < 1:3738470/71‑1 ACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG > 1:462140/1‑69 GATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG > 1:3561968/1‑57 ATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTG < 1:1125158/45‑1 ATGAACCCACCTCCTCACTCACCAATAAAGAGGTG > 1:4718870/1‑35 CACCTCCTCACTCACCAATAAAGAGGTGGGTTCATCCATGATGATGACTTTGGCAT > 1:7197933/1‑56 CACCTCCTCACTCA‑CAATAAAGAGGTGGGTTCATCCATGATGATGACTTTGGCATC > 1:2143382/1‑56 CTCCTCACTCACCAATAAAGAGGTGGGTTCTTCCATGATGATGACTTT < 1:2647755/48‑1 CCTCACTCACCAATAAAGAGGTGGGTTCATCCATGATGATGACTTTGG > 1:237184/1‑48 GAGGTGGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTT > 1:113297/1‑49 GGTGGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGT > 1:4486783/1‑71 TGGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTT < 1:5443086/45‑1 GGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGC > 1:4772622/1‑71 GGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGC > 1:3236261/1‑71 GGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGC > 1:7809396/1‑71 GGGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTA > 1:6533003/1‑56 GGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGCT < 1:3535213/71‑1 CCAAAACGCTGATGCTCGATGCCAAAGTCATCATCATGGATGAACCCACCTCCTCACTCACCAATAAAGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4315189‑4315115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtggGTTCATCCATGATGATGACTTTGGCATCGAGCATCAGCGTTTTGGCAATTTCTAGCATCTGCTTGTGGCT > AP009048/4315145‑4315214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |