| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4396234 | 116 (1.420) | 8 (0.110) | 5/90 | NT | 6.2% | intergenic (‑45/‑50) | rsgA/orn | ribosome small subunit‑dependent GTPase A/oligoribonuclease |
| ? | AP009048 | = 4396248 | 136 (1.820) | intergenic (‑59/‑36) | rsgA/orn | ribosome small subunit‑dependent GTPase A/oligoribonuclease | |||||
GCCTTTGGAGAGTTTATTTTTACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4396163‑4396234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAAAA < AP009048/4396248‑4396179 GCCTTTGGAGAGTTTATTTTTACTCAATCTTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATG < 1:104049/70‑1GCCTTTGGAGAGTTTATTTTTACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGA > 1:3678804/1‑71 CCTTTGGAGAGTTTATTTTTACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGA > 1:401506/1‑70 TACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATCA < 1:3243078/70‑1 CTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATCATAG < 1:4587472/71‑1 CTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATCAT < 1:168937/69‑1 TCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTAT < 1:2864173/46‑1 TCAATCGTACAGACTCCTGGTCGCCCCTGATCGGCAAAACATCTAT < 1:358312/46‑1 CCCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATC < 1:7490633/43‑1 CCCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATC < 1:5374727/43‑1 CCCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATC < 1:4329065/42‑1 CCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATCATA > 1:3725276/1‑44 CCTGATGGGCAAAACATCTATGATCCACAATTGCGTGTATCATA > 1:4152576/1‑44 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTA > 1:3925324/1‑70 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGG > 1:5206447/1‑43 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCA > 1:1036239/1‑40 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCA > 1:1990722/1‑40 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCA > 1:654199/1‑40 TGATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCA > 1:6813280/1‑40 GATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTA > 1:1299885/1‑69 ATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAA < 1:2832281/70‑1 ATCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAA < 1:1596358/70‑1 TCCACATTTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAAAA < 1:7841788/71‑1 TCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAAAA < 1:4742913/71‑1 GCCTTTGGAGAGTTTATTTTTACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4396163‑4396234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatCCACAATTGCGTGTATCATAGATGTTTTGCCCATCAGGGGCGACCAGGAGTCTGTACGATTGAGTAAAAA < AP009048/4396248‑4396179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |