| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4431588 | 133 (1.630) | 7 (0.090) | 4/90 | NT | 4.8% | coding (515/795 nt) | yjfZ | hypothetical protein |
| ? | AP009048 | = 4431608 | 158 (2.110) | coding (495/795 nt) | yjfZ | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCAGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4431515‑4431588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCTAA < AP009048/4431608‑4431540 TGCAGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGA > 1:2084049/1‑71 CAGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATT < 1:5698567/71‑1 AGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG < 1:1449822/71‑1 AGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG < 1:4790373/71‑1 AGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG < 1:581602/71‑1 GGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG < 1:120487/53‑1 GGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG < 1:2328964/53‑1 TTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACA < 1:2321627/71‑1 TTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGAT < 1:7508495/47‑1 AGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACAAT > 1:6103734/1‑71 GAAGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACA < 1:6156572/49‑1 GAAGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAAC < 1:3136514/48‑1 AGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACAA > 1:3482837/1‑48 AGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACAA > 1:4552982/1‑48 AGTTGGTCGATATAAAGATCGATTGCTGGTCATCTGAACTACCAACAA > 1:4226385/1‑48 ATTGCTGGTCCTCTGAACTACCAACAATCGATCTTTATATCGA > 1:236022/1‑43 ATTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCT < 1:1372288/71‑1 ATTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACT < 1:435887/49‑1 ATTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGAC > 1:7345519/1‑44 ATTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCG > 1:2469263/1‑42 TTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCT > 1:7276826/1‑70 TTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAG < 1:4716386/62‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAG < 1:3034927/62‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTT < 1:4597879/35‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTT < 1:5590914/35‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTT < 1:3029776/35‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTT < 1:2032040/35‑1 TTGCTGGTCATCTGAACTACCAACAATCGATCTTT < 1:820022/35‑1 TGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGC > 1:4139583/1‑63 TGCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGC > 1:3362145/1‑63 GCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCTAA < 1:461191/70‑1 GCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCTAA < 1:4034731/70‑1 GCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCTAA < 1:7567446/70‑1 TGCAGCAATGATGAATCCGAGGGCATTAGAAACGCCTGTAACAGTGCGAAGTTGGTCGATATAAAGATCGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4431515‑4431588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgCTGGTCATCTGAACTACCAACAATCGATCTTTATATCGACCAACTTCGCACTGTTACAGGCGTTTCTAA < AP009048/4431608‑4431540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |