| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4435134 | 72 (0.880) | 4 (0.060) | 3/82 | NT | 6.3% | coding (591/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | AP009048 | = 4435145 | 59 (0.870) | coding (602/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4435058‑4435134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcattcCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGACCAGGC < AP009048/4435145‑4435079 TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG < 1:1097713/71‑1TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:4989090/1‑71TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG < 1:4309375/71‑1TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:7326029/1‑71TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:3631945/1‑71 TGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGT > 1:3573873/1‑71 TGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG < 1:4872805/70‑1 TGTGTCGATGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGT > 1:7727852/1‑71 GTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGT > 1:3483043/1‑70 GTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGT > 1:5750436/1‑70 TGTCGCTGATTGTTGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACCGGTGTGGAAGCATCA < 1:1843401/71‑1 TGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCA < 1:3501710/71‑1 TGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCA < 1:5217685/71‑1 TGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTC < 1:2111238/70‑1 TCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATT < 1:3637120/71‑1 TCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATT < 1:1103190/71‑1 TCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCAT < 1:1737564/70‑1 TCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCAT > 1:1520104/1‑70 GCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC < 1:3811669/70‑1 GCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC < 1:2860325/70‑1 GCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC < 1:2285506/70‑1 GCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC < 1:729372/70‑1 TCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTC < 1:5163303/58‑1 CATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:2514730/1‑43 CATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:6998287/1‑43 CATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG > 1:7561559/1‑43 GGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG < 1:6339773/37‑1 GCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCG < 1:922132/36‑1 ATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC < 1:1179765/39‑1 GCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCCACAAATGCGCGAATGAC > 1:4691682/1‑55 TCACCGACTGGTGTGGAAGCGTCATTCCACAAATGCGCGA < 1:803628/40‑1 CGACTGGTGTGGAAGCGTCATTCCACAAATGCGCGAATG > 1:2049109/1‑39 CGACTGGTGTGGAAGCGTCATTCCACAAATGCGCGAATG > 1:530653/1‑39 CGTCATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGAC > 1:4577708/1‑70 GTCATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGACCA < 1:2592165/71‑1 TCATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGACCAG < 1:3962608/71‑1 CATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATG < 1:382313/65‑1 CATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATG < 1:1721461/65‑1 CATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATG < 1:3725919/65‑1 ATTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGA < 1:1219928/46‑1 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGAC > 1:5813680/1‑65 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGAC > 1:6694407/1‑65 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGAC > 1:4848406/1‑65 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGAC > 1:7610479/1‑65 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGC < 1:5663867/51‑1 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTG < 1:1824137/44‑1 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTG < 1:1615372/44‑1 TTCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTG > 1:3049264/1‑44 TCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGACCAGGC > 1:7939852/1‑69 TCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATG < 1:1966943/62‑1 TCCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCAC < 1:7138611/58‑1 CCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGC > 1:2491694/1‑49 CCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGC > 1:2671792/1‑49 CCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGA > 1:1114294/1‑43 CCACAAATGCGCGAATGACGCTTCCACACCAGACGGTGACTGAAAGTGC > 1:2480405/1‑49 TTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4435058‑4435134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcattcCACAAATGCGCGAATGACGCTTCCACACCAGTCGGTGACTGAAAGTGCATCGCCACCATGACCAGGC < AP009048/4435145‑4435079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |