| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4461591 = | 106 (1.300) | 7 (0.100) | 3/86 | NT | 8.2% | coding (1127/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | AP009048 | 4461615 = | 64 (0.900) | coding (1151/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
CTGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4461665‑4461591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaagTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCC > AP009048/4461615‑4461681 CTGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT > 1:5631930/1‑71CTGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT > 1:6769249/1‑71 TGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT > 1:2632456/1‑70 TGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT > 1:2946455/1‑70 GCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATG > 1:7790145/1‑70 CCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAA < 1:3156867/71‑1 CCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAA < 1:7311270/71‑1 CCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATG > 1:4918015/1‑69 CCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATG > 1:1331625/1‑69 CCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT < 1:6841213/68‑1 CACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG > 1:3387884/1‑71 CACTTCTGACACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG > 1:954555/1‑71 ACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG < 1:7485195/70‑1 ACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG < 1:5484736/70‑1 TGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT < 1:2808581/42‑1 TGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAAT < 1:6838037/42‑1 CCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAA > 1:6345170/1‑37 CCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAA > 1:1463016/1‑37 CCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAA > 1:464179/1‑37 CCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAA > 1:3252678/1‑37 CATCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCA > 1:502108/1‑62 CATCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGC < 1:3161823/42‑1 CATCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGC < 1:661278/42‑1 CATCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGC < 1:556331/42‑1 CATCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGC < 1:5889688/42‑1 TCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGCAT > 1:3274211/1‑42 TCGGCACGACCTAATGAAGTCTTCCTGCTGCAACCGGCGCAT > 1:5962370/1‑42 ATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAG > 1:5129941/1‑71 ATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAG > 1:2285779/1‑71 ATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTC < 1:2785933/69‑1 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:3988320/1‑71 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:5546889/1‑71 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:6642041/1‑71 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:4449581/1‑71 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:2363417/1‑71 TGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGC > 1:1485411/1‑71 GAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGA < 1:6758997/47‑1 GAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTG > 1:1716068/1‑42 AAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCC < 1:4871885/70‑1 GTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCC < 1:6234378/68‑1 CTGCCACTTCTGCCACCTGCCACGGAATATGCGCCGGTTGCAGCAGGAAGACTTCATCGGCACGACCTAATGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4461665‑4461591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaagTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCC > AP009048/4461615‑4461681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |