| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4468461 | 116 (1.420) | 4 (0.050) | 3/96 | NT | 3.6% | coding (929/1656 nt) | treC | trehalose‑6‑P hydrolase |
| ? | AP009048 | = 4468484 | 100 (1.250) | coding (906/1656 nt) | treC | trehalose‑6‑P hydrolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGCGAGAAACAATGCGCGGCTGATCGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4468391‑4468461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGCCTTGTTCTGGTGTAACCACGAT < AP009048/4468484‑4468415 AAAGCGAGAAACAATGCGCGGCTGATCGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTC > 1:2503804/1‑71 ATCGTGGTTACACCAGAACAAGGCATTCAATGCTACGTTGTGCATTCATTGTTCCGCCACTGGCAACAAGG < 1:594522/71‑1 CGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTC > 1:3682494/1‑45 CGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTC > 1:3793626/1‑45 AGGCATTCCATGCTACGTTGTGCATTCATTGTTCCGCCACTGGCAACAAGGAA > 1:1485057/1‑53 AGGCATTCCATGCTACGTTGTGCATTCATTGTTCCGCCACTGGCAACAAGGAA > 1:5830711/1‑53 TCCATGCTACGTTGTGCATTCATTGTTCCGCCACTGG < 1:712812/37‑1 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGCCTTGTTCTGGTGTAACCACGAT > 1:2113059/1‑71 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGC > 1:2188541/1‑49 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGC > 1:3241408/1‑49 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGC > 1:5975530/1‑49 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGC > 1:771865/1‑49 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATG > 1:2952790/1‑48 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATG > 1:4013593/1‑48 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATG > 1:4262606/1‑48 CATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATG > 1:6577832/1‑48 AAAGCGAGAAACAATGCGCGGCTGATCGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4468391‑4468461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATTGTTCCGCCACTGGCAACAAGGAATGCACAACGTAGCATGGAATGCCTTGTTCTGGTGTAACCACGAT < AP009048/4468484‑4468415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |