| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4547370 | 35 (0.430) | 14 (0.210) | 10/80 | NT | 31.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 33 (0.500) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4547292‑4547370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTG < AP009048/4547666‑4547598 ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:5741600/71‑1 TAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:3373090/1‑71 AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:1096111/1‑71 AAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:6467563/1‑71 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:3988148/60‑1 GAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAATTAAATACAAGACAATT > 1:752899/1‑59 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:161381/1‑49 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:3310838/1‑49 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:2408037/1‑39 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:6442871/1‑39 TAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGA > 1:1448964/1‑58 AATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:6187531/43‑1 AATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:2363646/35‑1 ATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:6987900/42‑1 ATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:3680055/1‑37 AAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:3063551/1‑36 AAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAA < 1:4251620/71‑1 AAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAA < 1:3439553/71‑1 AAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACA > 1:2728396/1‑70 TTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATA < 1:7354186/48‑1 AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTT > 1:7334526/1‑71 AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTT > 1:266997/1‑71 AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTT > 1:5042828/1‑71 AAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTT > 1:3589585/1‑71 AACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAG < 1:2838713/71‑1 AAATAAATACAAGACAATTGGGGTCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:2285229/1‑55 AAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:77921/1‑55 CAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGG < 1:7403986/71‑1 AAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTT < 1:7082160/55‑1 GACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCT > 1:4712805/1‑70 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:3572239/1‑40 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:1544774/1‑40 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:924589/1‑40 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCT < 1:5952332/71‑1 GGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTA < 1:4536752/71‑1 GGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTA < 1:7887123/71‑1 CCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGTTTAA > 1:5021997/1‑62 CATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTG < 1:3869836/71‑1 CATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTG > 1:7809776/1‑71 ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4547292‑4547370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTG < AP009048/4547666‑4547598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |