| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4561540 | 101 (1.240) | 7 (0.100) | 3/86 | NT | 6.9% | intergenic (‑540/‑133) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| ? | AP009048 | = 4561547 | 101 (1.410) | intergenic (‑547/‑126) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein | |||||
TCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4561467‑4561540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacaggCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAAAG < AP009048/4561547‑4561478 TCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGAC < 1:1638723/71‑1TCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGAC < 1:5960501/71‑1 ACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGAC > 1:1643893/1‑61 ATATTCATAGGCAAGTAAGGTTTTATACTTTGCTG < 1:4844411/35‑1 TATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTGT > 1:2864674/1‑51 TATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAG < 1:1149658/38‑1 TATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAG < 1:3358686/38‑1 AGTAAGGTTTTATACTTTGCTGACAGGCCTTAATCCTG < 1:967254/38‑1 AGTAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTG < 1:5484868/38‑1 AGTAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTG < 1:2055406/38‑1 AGTAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTG < 1:7537235/38‑1 TAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTGTC > 1:2482856/1‑38 TAAGGTTTTATACTTTGCTGACAGGCCTGAATCCTGTC > 1:6516112/1‑38 CAGGCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAA < 1:3570305/71‑1 AGGCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAA < 1:2280357/71‑1 AGGCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAA < 1:7564326/71‑1 AGGCCTGAATCCTGTCACCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAA < 1:2311823/71‑1 GGCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAA > 1:7378111/1‑69 GCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAAAG < 1:1300733/71‑1 TCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4561467‑4561540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacaggCCTGAATCCTGTCAGCAAAGTATAAAACCTTACTTGCCTATGAATATCTACTGACTTTTCAGGAAAAAAG < AP009048/4561547‑4561478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |