| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4578428 | 130 (1.600) | 7 (0.090) | 3/90 | NT | 5.8% | coding (1335/1518 nt) | yjiT | conserved hypothetical protein |
| ? | AP009048 | = 4578439 | 110 (1.470) | coding (1346/1518 nt) | yjiT | conserved hypothetical protein | |||||
ATGGCCAATCGAGGGCAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4578355‑4578428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTAGTGCTTTTAGTCCTAATACGTTTA < AP009048/4578439‑4578373 ATGGCCAATCGAGGGCAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACA < 1:1105249/71‑1 GCCAATCGAGGGCAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTT < 1:5292091/71‑1 CAATCGAGGGCAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTT < 1:911402/69‑1 CGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACTGTA > 1:1360834/1‑70 CGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACTGTA > 1:2609726/1‑70 CGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACTG > 1:770229/1‑68 ATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACTGTAACGT > 1:4216987/1‑71 ACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACT > 1:4925577/1‑58 ACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACT > 1:4934891/1‑58 ACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTTCATTTGCTGTAACT > 1:7701815/1‑58 TAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACTGT < 1:6296400/40‑1 TAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGT < 1:4289292/40‑1 TAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGT < 1:5196390/40‑1 TAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGT < 1:5675971/40‑1 TAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGT < 1:7202757/40‑1 AGTTTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTAGTGCTTTTAGTCCTAATACGTTTA > 1:3649811/1‑71 AGTTTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTAGTGCTTTTAGTCCTAATACGTTTA < 1:6211967/71‑1 AGTTTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTAGTGCTTTTAGTCCTAATACGTTT < 1:2035949/70‑1 GTTTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTC < 1:3825519/39‑1 TTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTA > 1:4392954/1‑44 ATGGCCAATCGAGGGCAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4578355‑4578428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttTCATTTGCTGTAACTGTAACGTCCTGACATCCCTTCACAGGTAGTGCTTTTAGTCCTAATACGTTTA < AP009048/4578439‑4578373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |