| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4599760 = | 122 (1.500) | 6 (0.080) | 3/88 | NT | 5.7% | coding (772/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 4599800 = | 88 (1.200) | coding (732/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator | |||||
GAGATCATCTCAGTCATCTTTCATTTTCACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4599832‑4599760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGA > AP009048/4599800‑4599868 GAGATCATCTCAGTCATCTTTCATTTTCACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCAT > 1:2742981/1‑71 AGATCATCTCAGTCATCTTTCATTTTCACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATT > 1:5295387/1‑71 CATCTCAGTCATCTTTCATTTTCACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATC < 1:4730020/64‑1 CACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCA < 1:7875074/43‑1 TATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACT < 1:6969304/65‑1 TATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACT < 1:2181205/65‑1 TATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACT < 1:4230585/65‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG < 1:1036809/41‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG < 1:830772/41‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG < 1:3791966/41‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCA < 1:2042506/38‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCA < 1:197642/38‑1 TCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCA < 1:7601830/38‑1 CAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACTGAGATGATC > 1:3772079/1‑71 CAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACTGAGATGATC > 1:4144847/1‑71 CAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG > 1:6418494/1‑40 CAATGGGACGAAAGCGATCTTAAACAGCGCAATATCA < 1:2894323/37‑1 ATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTC < 1:1536437/71‑1 ATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCT < 1:1733271/71‑1 TTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTG < 1:3367836/71‑1 TTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTG < 1:4920330/71‑1 TGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCT > 1:7133263/1‑69 TGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGCCAGCTG > 1:6890340/1‑70 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGA > 1:1361446/1‑70 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGA > 1:574801/1‑70 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGA > 1:5613435/1‑70 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAG < 1:6886393/53‑1 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAG < 1:673447/53‑1 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAA < 1:6890885/48‑1 GATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAA < 1:857377/48‑1 GAGATCATCTCAGTCATCTTTCATTTTCACTATCAATGGGACGAAAGCGATCTTAAACAGCGCAATATCATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4599832‑4599760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGA > AP009048/4599800‑4599868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |