| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 846152 | 69 (0.850) | 7 (0.110) +TTTATGCGTTT |
3/76 | NT | 10.2% | intergenic (‑250/+11) | ybiO/glnQ | predicted mechanosensitive channel/glutamine transporter subunit |
| ? | AP009048 | 2944517 = | 90 (1.110) | intergenic (‑19/+220) | ygdL/mltA | conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A | |||||
CTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACAC > AP009048/846083‑846222 | cTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:6059918/1‑71 (MQ=255) aCAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtg > 1:1383720/1‑71 (MQ=255) cAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtgt > 1:6678831/1‑71 (MQ=255) cAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:1289273/69‑1 (MQ=255) cAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:7225276/69‑1 (MQ=255) aGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTATGCCTGATAAGCGTAGCGCATCAGGCAATgtgt > 1:5834831/1‑71 (MQ=255) ttCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCt < 1:4194152/71‑1 (MQ=255) ttCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCt < 1:4184726/71‑1 (MQ=255) aTGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCttat > 1:5530740/1‑71 (MQ=255) aTGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCttat > 1:5263264/1‑71 (MQ=255) gCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATgtgt < 1:7610634/64‑1 (MQ=255) cAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTaa < 1:6257741/71‑1 (MQ=255) aTTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTaa > 1:4360312/1‑69 (MQ=255) ttttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAagag < 1:7151189/71‑1 (MQ=255) ttttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAagag < 1:5043986/71‑1 (MQ=255) ttttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAagag < 1:5313976/71‑1 (MQ=255) ttttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAagag < 1:512695/71‑1 (MQ=255) ttttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAagag < 1:5024916/71‑1 (MQ=255) ttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 1:86217/1‑54 (MQ=255) ttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 1:7201315/1‑54 (MQ=255) ttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAag > 1:2338421/1‑67 (MQ=255) ttAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGAc > 1:3563602/1‑71 (MQ=255) ttAATAAGTTGCCAGATATCCTCTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAag > 1:5141239/1‑67 (MQ=255) aataaGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGAc > 1:5675699/1‑69 (MQ=255) aataaGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGAc > 1:6496309/1‑69 (MQ=255) ataaGTTGCCAGATATCCTGTAGGCCTGATAAGCGTATCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:6781247/71‑1 (MQ=255) ataaGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg < 1:2948404/69‑1 (MQ=255) ataaGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:4623609/71‑1 (MQ=255) aaGTTGCCAGATATGCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTaa > 1:4176441/1‑61 (MQ=255) aGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtgc < 1:2101581/69‑1 (MQ=255) gTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg > 1:4013420/1‑65 (MQ=255) gCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaa < 1:7209519/70‑1 (MQ=255) gCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaa < 1:5389526/70‑1 (MQ=255) aGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCa < 1:99212/66‑1 (MQ=255) aGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCa < 1:2845841/66‑1 (MQ=255) aGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCa < 1:2718115/66‑1 (MQ=255) aGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAAt < 1:5886628/71‑1 (MQ=255) gATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAAt > 1:7242096/1‑70 (MQ=255) gATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTCTCTTAATAAGacaca < 1:6262161/58‑2 (MQ=17) atatCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAgaga < 1:6882790/55‑1 (MQ=255) tatCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTcc < 1:7564663/71‑1 (MQ=255) tatCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTcc < 1:5808809/71‑1 (MQ=255) atCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg > 1:1435194/1‑55 (MQ=255) atCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCt > 1:7088330/1‑71 (MQ=255) tCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCttatta > 1:3231390/1‑47 (MQ=255) tCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCttatta > 1:6871170/1‑47 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAgaga < 1:5529376/50‑1 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAgaga < 1:4820643/50‑1 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGc < 1:2366260/70‑1 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatgcgttt < 1:4200096‑M1/42‑12 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatgcgtt < 1:7010831‑M1/41‑11 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatgcgtt < 1:4260504‑M1/41‑11 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatgcgtt < 1:5899669‑M1/41‑11 (MQ=255) gTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg > 1:902981/1‑50 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg > 1:5349658/1‑50 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTg < 1:438064/67‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGT‑CTGCAAAAATTCCTGCAAgc < 1:6090828/70‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:1887428/57‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:2467752/57‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:806328/57‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctcaccctaa > 1:1362753‑M1/1‑24 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctcaccctaa > 1:4886341‑M1/1‑24 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttacccctcaccctaa > 1:7126223‑M1/1‑24 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaaaa > 1:7654955/1‑55 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaaaa > 1:111796/1‑55 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:4019374/45‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctca < 1:5112741‑M1/52‑31 (MQ=255) gATAAGCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctca < 1:2491129‑M1/52‑31 (MQ=255) aTAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGc < 1:3217948/69‑1 (MQ=255) aTAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTc > 1:1760237/1‑71 (MQ=255) aaGCGTAGCGCATCAGGCAATGTGTCTTATTAagag > 1:7248040/1‑36 (MQ=255) aaGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTcgg > 1:3223263/1‑71 (MQ=255) aGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTcgg < 1:6801064/70‑1 (MQ=255) gCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctca > 1:3066314‑M1/1‑17 (MQ=255) gCGTAGCGCATCAGGCAtttatgcgtttagggcgaggttatccctca > 1:1743673‑M1/1‑17 (MQ=255) gCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:5081431/39‑1 (MQ=255) gCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:2226180/39‑1 (MQ=255) gCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtg < 1:3612331/39‑1 (MQ=255) gCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTcggcg < 1:7573888/71‑1 (MQ=255) gcgcATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGtt < 1:2620669/70‑1 (MQ=255) cgcATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCt < 1:167705/71‑1 (MQ=255) gcATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCtt < 1:5650101/71‑1 (MQ=255) gcATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCt < 1:1403589/70‑1 (MQ=255) aTCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:4103056/37‑1 (MQ=255) aTCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:419217/37‑1 (MQ=255) aTCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaa < 1:6217090/37‑1 (MQ=255) tCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTg < 1:5863290/69‑1 (MQ=255) aGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATc < 1:1685052/70‑1 (MQ=255) aGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATc < 1:434581/70‑1 (MQ=255) aGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCa < 1:1337936/71‑1 (MQ=255) gCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTg < 1:496557/40‑1 (MQ=255) gCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAac < 1:2074228/71‑1 (MQ=255) aaTGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAacac > 1:7500677/1‑71 (MQ=255) | CTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACAC > AP009048/846083‑846222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |