| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1497534 | 68 (0.840) | 5 (0.070) | 3/88 | NT | 7.1% | coding (533/1344 nt) | ydcJ | conserved hypothetical protein |
| ? | AP009048 | = 1497540 | 69 (0.940) | coding (539/1344 nt) | ydcJ | conserved hypothetical protein | |||||
Only 100 of 115 total aligned reads displayed.
CACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAACCTAT > AP009048/1497466‑1497604 | cACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAAcacaggcacag > 1:5370961/1‑70 (MQ=255) aCCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAAcacaggcacag > 1:4988340/1‑69 (MQ=255) ctcgtTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTt > 1:1406818‑M2/3‑70 (MQ=255) cACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGtt < 1:381774/70‑1 (MQ=255) cACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTt < 1:3026829‑M2/71‑2 (MQ=255) cACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTt < 1:5970663‑M2/71‑2 (MQ=255) cACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTt < 1:3818701‑M2/71‑2 (MQ=255) aCGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtg > 1:6154996‑M2/1‑69 (MQ=255) cGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtgt < 1:2611789‑M2/71‑4 (MQ=255) cGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtgt < 1:2016348‑M2/71‑4 (MQ=255) ttGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAAcacaggcacag < 1:7840957/61‑1 (MQ=255) ttGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtgtg < 1:5263410‑M2/70‑5 (MQ=255) gACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAgg > 1:7552199/1‑69 (MQ=255) aCAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAAcacaggcacag < 1:3363905/55‑1 (MQ=255) aCAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAAcacaggcacag < 1:2925309/55‑1 (MQ=255) aCAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAaactcctgtgcctgt > 1:2326467‑M1/1‑54 (MQ=255) cAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAgg < 1:4097954/67‑1 (MQ=255) cAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGc > 1:1164595/1‑71 (MQ=255) aCTTTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGt < 1:5117990/56‑1 (MQ=255) cTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCt > 1:332560/1‑71 (MQ=255) cTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCt > 1:2340412/1‑71 (MQ=255) cTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCt > 1:2331249/1‑71 (MQ=255) tAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCa > 1:1501325/1‑58 (MQ=255) agagGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGaaa > 1:5462461/1‑71 (MQ=255) agagGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGaaa > 1:5453025/1‑71 (MQ=255) agGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACg > 1:7496070/1‑71 (MQ=255) agGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACg > 1:1164407/1‑71 (MQ=255) agGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACg > 1:3344324/1‑71 (MQ=255) agGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACg < 1:4698058/71‑1 (MQ=255) ggAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGt > 1:7442510/1‑71 (MQ=255) ggAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGt > 1:1471928/1‑71 (MQ=255) gAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAaactcctgtgc < 1:1091261‑M1/52‑12 (MQ=255) aaTATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGttt > 1:4030069/1‑71 (MQ=255) atatGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAaactcctgtgcct > 1:2449962‑M1/1‑39 (MQ=255) atatGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAaactcctgtgcct > 1:1658103‑M1/1‑39 (MQ=255) tatGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCg < 1:6387639/71‑1 (MQ=255) tatGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCg < 1:2019376/71‑1 (MQ=255) atGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAg > 1:4926547/1‑54 (MQ=255) tGAGGAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCt < 1:2703466/71‑1 (MQ=255) tGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtgtg < 1:6707961‑M2/46‑5 (MQ=255) tGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCt < 1:5597888/71‑1 (MQ=255) tGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAGAGTTtgtg < 1:5239068‑M2/46‑5 (MQ=255) gAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTtgt > 1:7852595‑M2/1‑41 (MQ=255) agcagcAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTgg > 1:1063024/1‑71 (MQ=255) agcagcAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTg < 1:1007767/70‑1 (MQ=255) gcagcaGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTgg > 1:7107481/1‑70 (MQ=255) cagcagGGCGGTTTTAACGAAACACAGGCACAGGAGTTt > 1:360821‑M2/1‑38 (MQ=255) cagGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCAc > 1:6905720/1‑69 (MQ=255) agGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAg > 1:863246/1‑71 (MQ=255) agGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAg < 1:6801341/71‑1 (MQ=255) gggCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTc < 1:4908032/59‑1 (MQ=255) gggCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGt < 1:7909940/71‑1 (MQ=255) ggTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAg > 1:5968686/1‑70 (MQ=255) ttttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTg > 1:5029873/1‑43 (MQ=255) ttttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCg < 1:4571850/54‑1 (MQ=255) tttAACGAAACACAGGCACAGGAGTTTGTTCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAAc > 1:6085171/1‑71 (MQ=255) tttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAAc > 1:6457263/1‑71 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGttt > 1:6097504/1‑50 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGc > 1:2523001/1‑53 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTg > 1:3743502/1‑55 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACg > 1:179306/1‑71 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACg > 1:27336/1‑71 (MQ=255) ttAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACg > 1:5884138/1‑71 (MQ=255) ttAACGAAACACAGGCACAGGAGATTGTGCAGGAAGCCCt > 1:798419/1‑40 (MQ=255) aaCGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACgg > 1:2962075/1‑70 (MQ=255) aCGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTTGAAACGTTTCGCTGGCACCAGTCAGCAACGGt < 1:2790798/70‑1 (MQ=255) aCGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAg < 1:1800887/59‑1 (MQ=255) aCGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGGCAGCAACGGt < 1:6827180/70‑1 (MQ=255) cGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGt < 1:1271777/59‑1 (MQ=255) cGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGt < 1:6282145/59‑1 (MQ=255) aaCACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGAt > 1:6499742/1‑70 (MQ=255) acacAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATg > 1:7229182/1‑70 (MQ=255) cacaggcacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACgg < 1:6716512/63‑1 (MQ=255) cacaggcacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGt < 1:4819631/64‑1 (MQ=255) cacaggcacaggAGTATGTGCAGGAAGCCCTGGAAACGTTTAGCTGGCACCAGTCAGCaa > 1:7508027/1‑60 (MQ=255) acaggcacaggAGTTtgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgt > 1:2326467‑M2/1‑15 (MQ=255) acaggcacaggAGTTTGTGCAGGAAGCCCTGGAAAc > 1:282806/1‑36 (MQ=255) acaggcacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATg > 1:7532967/1‑68 (MQ=255) caggcacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATgaaga < 1:4542576/71‑1 (MQ=255) aggcacaggAGTTtgtgcctgtgtttcgttaaaaccgccctgctgctcatat > 1:1658103‑M2/1‑13 (MQ=255) aggcacaggAGTTtgtgcctgtgtttcgttaaaaccgccctgctgctcatat > 1:4183302‑M2/1‑13 (MQ=255) aggcacaggAGTTtgtgcctgtgtttcgttaaaaccgccctgctgctcatat > 1:2449962‑M2/1‑13 (MQ=255) aggcacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATgaaga > 1:437497/1‑70 (MQ=255) gcacaggAGTTtgtgcctgtgtttcgttaaaaccgccctgctgctcatattc < 1:1091261‑M2/52‑42 (MQ=255) cacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAAcc < 1:6904400/71‑1 (MQ=255) cacaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAAcc < 1:3880725/71‑1 (MQ=255) cacaaactcttgtgcctgtgtttcgttaaaaccgccctgctgctca < 1:5239068‑M1/46‑43 (MQ=255) cacaaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaa < 1:5263410‑M1/70‑67 (MQ=255) cacaaactcctgtgcctgtgtttcgttaaaaccgccctgctgctca < 1:6707961‑M1/46‑43 (MQ=255) cacaaactcctgtgcctgtgtttcgttaaaaccgccctgctgctca < 1:1714889‑M1/46‑43 (MQ=255) acaggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAAc > 1:4506513/1‑54 (MQ=255) acaaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaacg < 1:2016348‑M1/71‑69 (MQ=255) acaaactcctgtgcctgtgtttcgttaaaaccgccctgctgctc > 1:7852595‑M1/1‑3 (MQ=255) caggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAACCTa > 1:213100/1‑71 (MQ=255) caggAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAACCTa < 1:4756001/71‑1 (MQ=255) caaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaacgt > 1:6154996‑M1/1‑2 (MQ=255) aaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaacgtg < 1:5970663‑M1/71‑71 (MQ=255) aaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaacgtg < 1:3818701‑M1/71‑71 (MQ=255) aaactcctgtgcctgtgtttcgttaaaaccgccctgctgctcatattcctctaacagttgtcgacaacgag > 1:1406818‑M1/1‑1 (MQ=255) aaactcctgtgcctgtgtttcgttaaaaccgccctgctg > 1:360821‑M1/1‑1 (MQ=255) | CACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAGGAGTTTGTGCAGGAAGCCCTGGAAACGTTTCGCTGGCACCAGTCAGCAACGGTAGATGAAGAAACCTAT > AP009048/1497466‑1497604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |