| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3192959 | 83 (1.020) | 8 (0.110) | 4/86 | NT | 9.7% | coding (1440/1662 nt) | yqiK | conserved hypothetical protein |
| ? | AP009048 | = 3192968 | 76 (1.060) | coding (1449/1662 nt) | yqiK | conserved hypothetical protein | |||||
Only 100 of 162 total aligned reads displayed.
TGCCTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTGGGGGGCGGAAACCTGG > AP009048/3192895‑3193029 | tgcctgcGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGAt > 1:3441880/1‑71 (MQ=255) cctgcGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATg < 1:416946/70‑1 (MQ=255) ctgcGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGt > 1:7472525/1‑71 (MQ=255) tGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTc < 1:5070724‑M2/71‑2 (MQ=255) tGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTc < 1:7075378‑M2/71‑2 (MQ=255) cGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg > 1:354482‑M2/1‑68 (MQ=255) cGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTct < 1:2633847‑M2/70‑3 (MQ=255) ggTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg < 1:4011514‑M2/70‑4 (MQ=255) ggTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg < 1:5135770‑M2/70‑4 (MQ=255) aaTAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctgaat > 1:4532015‑M2/1‑64 (MQ=255) aTAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCg < 1:6076831/71‑1 (MQ=255) tAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGt > 1:5843051/1‑71 (MQ=255) agagAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGt < 1:5063216/70‑1 (MQ=255) agagAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:1947592‑M1/1‑52 (MQ=255) agagAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:2683606‑M1/1‑52 (MQ=255) gagaAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTg > 1:1362387/1‑70 (MQ=255) gagaAATCCGGTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGaccatcgacctgaataatc < 1:609218‑M1/70‑20 (MQ=255) agaAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTggc > 1:2851976/1‑71 (MQ=255) aaaTCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTc < 1:5295164‑M2/58‑2 (MQ=255) cGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTc < 1:4079288/46‑1 (MQ=255) cGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTc < 1:5950964/46‑1 (MQ=255) cGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTc < 1:2011191‑M2/53‑2 (MQ=255) cGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTc < 1:1651995‑M2/53‑2 (MQ=255) gAGCCGTTGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:1030050‑M1/1‑39 (MQ=255) gAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGt > 1:1500055/1‑48 (MQ=255) gAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCgg > 1:1683523/1‑70 (MQ=255) gAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:5925058‑M1/1‑39 (MQ=255) gAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:7718757‑M1/1‑39 (MQ=255) aGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCggg < 1:7152373/70‑1 (MQ=255) aGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGt < 1:359184/71‑1 (MQ=255) aGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGATGCggg < 1:1017399/70‑1 (MQ=255) gacGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCgg < 1:5793827/66‑1 (MQ=255) gCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTg < 1:3890394/71‑1 (MQ=255) ccGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGTCGGCGCt < 1:4801687/63‑1 (MQ=255) cGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctga < 1:5080314‑M2/48‑5 (MQ=255) cGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctga < 1:5353655‑M2/48‑5 (MQ=255) cGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctga < 1:4014705‑M2/48‑5 (MQ=255) cGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctga < 1:5588059‑M2/48‑5 (MQ=255) cGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctga < 1:6815111‑M2/48‑5 (MQ=255) gATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCgg > 1:3197232/1‑65 (MQ=255) gATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCgg > 1:2414545/1‑65 (MQ=255) gATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATg > 1:7905090/1‑71 (MQ=255) gATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATg > 1:223481/1‑71 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGaccatcgac < 1:1347959‑M1/42‑10 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGaccatcgac < 1:5518251‑M1/42‑10 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGaccatcgac < 1:337081‑M1/42‑10 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg > 1:6290979‑M2/1‑42 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg > 1:3476188‑M2/1‑42 (MQ=255) aTGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTg < 1:3033237/67‑1 (MQ=255) tGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGc > 1:1497785/1‑70 (MQ=255) gTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTct > 1:3202177‑M2/1‑37 (MQ=255) gTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGgcggcg < 1:6639825/53‑1 (MQ=255) gTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGgcggcg < 1:749470/53‑1 (MQ=255) tCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAacac < 1:6468880/71‑1 (MQ=255) cAATCGACGGTATCAAGATTATTCAGaccatcgacct > 1:228179‑M1/1‑26 (MQ=255) cAATCGACGGTATCAAGATTATTCAGaccatcgacct > 1:4526182‑M1/1‑26 (MQ=255) cAATCGACGGTATCAAGATTATTCAGGTCGATGGTctg < 1:4407188‑M2/38‑4 (MQ=255) cAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCCCTGCGGGt > 1:3004254/1‑59 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTggc < 1:1477191/46‑1 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTggc < 1:3543976/46‑1 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCg > 1:7879296/1‑55 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCg > 1:7605956/1‑55 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACgg > 1:6698155/1‑71 (MQ=255) aaTCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATACAAACACgg > 1:7283354/1‑71 (MQ=255) gACGGTATCAAGATTATTCAGGTCGATGGTctgaat < 1:4970543‑M2/36‑7 (MQ=255) gACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGgcgc < 1:6380777/47‑1 (MQ=255) gACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTaa < 1:5093183/71‑1 (MQ=255) gACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTaa < 1:2375398/71‑1 (MQ=255) ggTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAAtgt > 1:6346417/1‑71 (MQ=255) gTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAAtgtg < 1:3651071/71‑1 (MQ=255) tATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTgg > 1:4768219/1‑71 (MQ=255) aaGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCg > 1:2704514/1‑42 (MQ=255) aaGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAAtg < 1:29468/64‑1 (MQ=255) aaGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTgggggg > 1:680543/1‑71 (MQ=255) attattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGAt > 1:2816770/1‑45 (MQ=255) attattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACg < 1:1702557/54‑1 (MQ=255) attattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACg < 1:3826380/54‑1 (MQ=255) ttattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTGGGGGGCgg > 1:1115820/1‑70 (MQ=255) ttattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTGGGGGGCgg > 1:2552907/1‑70 (MQ=255) ttattCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTGGGGGGCGGa < 1:3376314/71‑1 (MQ=255) attCAGaccatcgacctgaataatcttgataccgtc < 1:7889474‑M1/36‑31 (MQ=255) ttCAGGTCGATGGTctgaataatcttgataccgtcgattgacttcatcggctcaacgga < 1:2059900‑M2/59‑46 (MQ=255) ttCAGGTCGATGGTctgaataatcttgataccgtcgattgacttcatcggctcaacgga < 1:6773312‑M2/59‑46 (MQ=255) tCAGaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttctctattacc > 1:4364685‑M1/1‑4 (MQ=255) tCAGaccatcgacctgaataatcttgataccgtcgattgacttcatcg < 1:5588059‑M1/48‑45 (MQ=255) tCAGaccatcgacctgaataatcttgataccgtcgattgacttcatcg < 1:5654021‑M1/48‑45 (MQ=255) cAGaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttctctattacc < 1:4011514‑M1/70‑68 (MQ=255) cAGaccatcgacctgaataatcttgataccgtcgattgacttcat > 1:6290979‑M1/1‑3 (MQ=255) cAGaccatcgacctgaataatcttgataccgtcgattgacttcat > 1:3476188‑M1/1‑3 (MQ=255) cAGaccatcgacctgaataatcttgataccgtcgattgact > 1:6027698‑M1/1‑3 (MQ=255) cAGaccatcgacctgaataatcttgataccgtcgattg < 1:4407188‑M1/38‑36 (MQ=255) aGaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttctctattaccg < 1:2633847‑M1/70‑69 (MQ=255) aGaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttc > 1:6339371‑M1/1‑2 (MQ=255) aGaccatcgacctgaataatcttgataccgtcgattg > 1:5387056‑M1/1‑2 (MQ=255) aGGTCGATGGTctgaataatcttgataccgtcgattg > 1:4526182‑M2/1‑11 (MQ=255) gaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttctctattaccgca < 1:7075378‑M1/71‑71 (MQ=255) gaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggatttctctattaccgca < 1:3308603‑M1/71‑71 (MQ=255) gaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacggattt < 1:5295164‑M1/58‑58 (MQ=255) gaccatcgacctgaataatcttgataccgtcgattgacttcatcggctcaacg < 1:2011191‑M1/53‑53 (MQ=255) gaccatcgacctgaataatcttgataccgtcgattgacttc > 1:1303558‑M1/1‑1 (MQ=255) | TGCCTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGGTCGATGGTCTGAATCGTGGCGGCGCTGCGGGTGATGCAAACACGGGTAATGTGGGGGGCGGAAACCTGG > AP009048/3192895‑3193029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |