| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3750590 | 0 (0.000) | 102 (1.360) | 49/90 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AP009048 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 144 total aligned reads displayed.
TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > AP009048/3750520‑3750660 | cccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA > 1:5571466‑M1/1‑70 (MQ=255) cTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac < 1:2602613‑M1/71‑4 (MQ=255) tgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaa < 1:6194426‑M1/70‑6 (MQ=255) gAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:2342808‑M1/1‑64 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 1:5839117‑M1/71‑9 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:2700132‑M1/70‑8 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:4686035‑M1/70‑8 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:5958611‑M1/1‑59 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataa < 1:7301384‑M1/70‑14 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat < 1:4263959‑M1/68‑12 (MQ=255) tCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:3353981‑M1/66‑13 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:5235756‑M1/1‑53 (MQ=255) gCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:1603816‑M1/1‑51 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgag < 1:4554537‑M1/68‑19 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:7601560‑M1/57‑8 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaa > 1:4662878‑M1/1‑50 (MQ=255) tataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat > 1:3785531‑M1/1‑49 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac < 1:2381592‑M1/51‑4 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatg < 1:5475067‑M1/70‑24 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagaga > 1:2170235‑M1/1‑47 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag < 1:2377887‑M1/53‑7 (MQ=255) aCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:1825398‑M1/1‑46 (MQ=255) aCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:1373986‑M1/1‑46 (MQ=255) cGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct < 1:5877866‑M1/71‑28 (MQ=255) cGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct < 1:140336‑M1/71‑28 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:5755622‑M1/1‑42 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:6178968‑M1/1‑42 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:2013609‑M1/1‑42 (MQ=255) aaTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgc > 1:7198326‑M1/1‑39 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:1347422‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca > 1:1107247‑M1/1‑38 (MQ=255) ttCGCCAGTTATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:2580676‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3696265‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:6814733‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3940825‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:4202179‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:3016275‑M1/70‑34 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 1:2374941‑M1/1‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:1296779‑M1/70‑36 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggc < 1:2112269‑M1/71‑39 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:1471688‑M1/1‑33 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa > 1:6387953‑M1/1‑33 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa > 1:3988842‑M1/1‑33 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3502547‑M1/67‑35 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga > 1:5404343‑M1/1‑33 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:547303‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:4809105‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:5431311‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:1096442‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:6212998‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:6388567‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:1295310‑M1/1‑31 (MQ=255) tatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatg > 1:1221171‑M1/1‑28 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:1864209‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa > 1:7869875‑M1/1‑27 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:5786947‑M1/60‑35 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:4634001‑M1/1‑25 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaataaacgag < 1:5249867‑M1/43‑19 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:1064938‑M1/64‑41 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:1637187‑M1/1‑23 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga > 1:7367135‑M1/1‑22 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacatttgcaaaaggcaaaattaaga > 1:5069992‑M1/1‑22 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga < 1:3090532‑M1/46‑25 (MQ=255) aaGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:3714177‑M1/1‑19 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag < 1:5191969‑M1/71‑54 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgaga > 1:5045176‑M1/1‑18 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:218181‑M1/1‑17 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:3877553‑M1/1‑17 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:910885‑M1/1‑17 (MQ=255) catcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaa > 1:6917679‑M1/1‑13 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttggaaa > 1:3492084‑M1/1‑12 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca > 1:6151830‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa > 1:7405433‑M1/1‑11 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaat < 1:222905‑M1/71‑63 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:7899851‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa < 1:3262591‑M1/70‑62 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa < 1:4135268‑M1/70‑62 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa < 1:4267015‑M1/70‑62 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4416511‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa < 1:7653781‑M1/70‑62 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4794700‑M1/1‑9 (MQ=255) tttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:1470913‑M1/1‑8 (MQ=255) tttACTAAaacaagtaaataaacgagagatgacctttg < 1:2113127‑M1/38‑31 (MQ=255) tttACTAAaaaaagtaaataaacgagagatgacctttg < 1:2155733‑M1/38‑31 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4859387‑M1/1‑7 (MQ=255) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatag < 1:7130213‑M1/70‑65 (MQ=255) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggc < 1:6592918‑M1/44‑39 (MQ=255) tACTAAaacaagtaaataaacgagagatgaccttt > 1:5210508‑M1/1‑6 (MQ=255) tACTAAaacaagtaaataaacgagagatgaccttt > 1:230058‑M1/1‑6 (MQ=255) aCTAAaacaagtaaataaactagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:5550152‑M1/1‑5 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaattaagatatagcaaacaaatagat < 1:713916‑M1/70‑66 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4579790‑M1/1‑5 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggc < 1:292443‑M1/43‑39 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat < 1:7818190‑M1/70‑67 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat > 1:5323291‑M1/1‑4 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:3774100‑M1/48‑45 (MQ=255) aaacaagtaaataatggagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:7191333‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:451209‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca < 1:3084946‑M1/69‑69 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca < 1:1197600‑M1/69‑69 (MQ=255) | TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > AP009048/3750520‑3750660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |