| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3992197 = | 95 (1.170) | 8 (0.110) | 4/84 | NT | 9.6% | intergenic (‑310/+567) | arsR/gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase |
| ? | AP009048 | 3992225 = | 69 (0.990) | intergenic (‑338/+539) | arsR/gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase | |||||
Only 100 of 138 total aligned reads displayed.
CAATACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGA > AP009048/3992127‑3992267 | cAATACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCgg > 1:2202906/1‑71 (MQ=255)aaccgacgcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaag < 1:3880299‑M1/1‑1 (MQ=255)aaccgacgcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaag < 1:6021730‑M1/1‑1 (MQ=255) aaTACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCgg > 1:7163682/1‑70 (MQ=255) ccgacgcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGta < 1:3769681‑M1/3‑1 (MQ=255) ccgacgcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGta > 1:7799558‑M1/69‑71 (MQ=255) tACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtat < 1:3893519/71‑1 (MQ=255) tACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtat < 1:2673894/71‑1 (MQ=255) gacgcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGtat < 1:4269534‑M1/4‑1 (MQ=255) cTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtata < 1:48388/70‑1 (MQ=255) gttAGCCACTGGCTAATATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTatatat > 1:6167210/2‑71 (MQ=255) gcaaagtcggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGtatata < 1:2280280‑M1/7‑1 (MQ=255) ttAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑c > 1:3196938/1‑71 (MQ=255) ttAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑c > 1:5644087/1‑71 (MQ=255) ttAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑c < 1:1813918/71‑1 (MQ=255) aGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑Cg > 1:1077340/1‑70 (MQ=255) gCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCa < 1:1512162/71‑1 (MQ=255) ccAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑Cg < 1:4225563/68‑1 (MQ=255) cAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGt > 1:6429144/1‑71 (MQ=255) aGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCTGTATATAT‑‑CGCAGt > 1:4054493/1‑70 (MQ=255) aGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGt > 1:5936281/1‑70 (MQ=255) ggtttttttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGtat < 1:6176035‑M1/4‑1 (MQ=255) gTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGt < 1:6689401/57‑1 (MQ=255) tGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGTGAGCACTTCGGTATATAT‑‑CGCAGTGAc < 1:7569413/71‑1 (MQ=255) cTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGAt > 1:3068349/1‑71 (MQ=255) cTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGAt < 1:328763/71‑1 (MQ=255) tAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGta > 1:3060623/1‑53 (MQ=255) tttacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGTATATAT‑‑CGCAGTGACGAtt < 1:924361‑M1/21‑1 (MQ=255) aaCATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtata > 1:3791173/1‑54 (MQ=255) aaCATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtata > 1:3798427/1‑54 (MQ=255) aaCATTGCAAGAATTAGCGATTTCTTCAGCTGG‑GGAGGGAGCACTTCGGtata > 1:2016318/1‑53 (MQ=255) aCATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTg > 1:1235669/1‑63 (MQ=255) aCATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGAtt < 1:7283829/69‑1 (MQ=255) tacatccggattcggacaaggcttaatatgacgatgacccagtgaaaGt > 1:1191867‑M1/48‑49 (MQ=255) cATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTtat < 1:2784779/71‑1 (MQ=255) aTTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑Cg < 1:2426182/56‑1 (MQ=255) atccggattcggacaaggcttaatatgacgatgacccagtgaaaGTATATAT‑‑CGCAGTGACGATTtatata > 1:5256923‑M1/45‑71 (MQ=255) ccggattcggacaaggcttaatatgacgatgacccagtgaaaGtata < 1:7219787‑M1/5‑1 (MQ=255) ccggattcggacaaggcttaatatgacgatgacccagtgaaaGt < 1:1126499‑M1/2‑1 (MQ=255) ccggattcggacaaggcttaatatgacgatgacccagtgaaaGt < 1:289480‑M1/2‑1 (MQ=255) cAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtat > 1:3741178/1‑46 (MQ=255) cAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGtat > 1:4233453/1‑46 (MQ=255) cAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATAc < 1:3148701/70‑1 (MQ=255) cAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACt < 1:1551148/71‑1 (MQ=255) cAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACt > 1:3568324/1‑71 (MQ=255) cggattcggacaaggcttaatatgacgatgacccagtgaaaGTATATATATCGCAGTGACGATTta > 1:2522280‑M1/42‑66 (MQ=255) cggattcggacaaggcttaatatgacgatgacccagtgaaaGTATATATATCGCAGTGACGATTta > 1:3986341‑M1/42‑66 (MQ=255) aaGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACg < 1:1054235/59‑1 (MQ=255) aaGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACtt < 1:7059555/71‑1 (MQ=255) gAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACttt > 1:3350748/1‑70 (MQ=255) gAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACttt > 1:4895748/1‑70 (MQ=255) ttAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACt < 1:3307512/71‑1 (MQ=255) ttAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACt > 1:4550451/1‑71 (MQ=255) ggacaaggcttaatatgacgatgacccagtgaaaGTATATAT‑‑CGCAGTGACGATTTATATACtt < 1:888897‑M1/30‑1 (MQ=255) aGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTgg > 1:5062926/1‑71 (MQ=255) cGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACt < 1:5832830/61‑1 (MQ=255) aTTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCa < 1:3184852/71‑1 (MQ=255) aggcttaatatgacgatgacccagtgaaaGTATATATATCGCAGTTACGATTta > 1:7423699‑M1/30‑54 (MQ=255) ttcttcAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATc > 1:388910/1‑71 (MQ=255) cttcAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGc < 1:6214483/37‑1 (MQ=255) cttcAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTc < 1:7718271/58‑1 (MQ=255) cttcAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCg < 1:4276329/70‑1 (MQ=255) ttcAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACg < 1:5159658/43‑1 (MQ=255) aGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGt > 1:6362279/1‑67 (MQ=255) aGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCata > 1:910241/1‑71 (MQ=255) aGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCat < 1:804457/70‑1 (MQ=255) cTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCAc < 1:4312579/54‑1 (MQ=255) cTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCAc < 1:5861365/54‑1 (MQ=255) ggCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATAc > 1:7671122/1‑46 (MQ=255) ggagggagCACTTCGGTATATAT‑‑CTCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTaa < 1:2504391/68‑1 (MQ=255) ggagggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGt < 1:5614823/60‑1 (MQ=255) ggagggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGt < 1:203986/60‑1 (MQ=255) gagggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACttt < 1:3525647/45‑1 (MQ=255) agggagCACTTCGGTATATAT‑‑CGCATTGACGATTTATATACTTTCACTgg > 1:2823673/1‑50 (MQ=255) agggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCtt < 1:7808180/71‑1 (MQ=255) agggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCtt > 1:7357519/1‑71 (MQ=255) gggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAg < 1:5638981/66‑1 (MQ=255) gggagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTg > 1:7113793/1‑71 (MQ=255) gagCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACt < 1:7235946/39‑1 (MQ=255) agCACTTCGGTATATAT‑‑CGCAGTGCCGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc > 1:1705036/1‑71 (MQ=255) agCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc < 1:4735360/71‑1 (MQ=255) agCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc > 1:4505352/1‑71 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATAc < 1:3733891/36‑1 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATAc < 1:6717618/36‑1 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCAGTg < 1:4575455/44‑1 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGt < 1:6555813/53‑1 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTaa < 1:43052/61‑1 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc > 1:4177452/1‑70 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc > 1:4304293/1‑70 (MQ=255) gCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTcc > 1:1989014/1‑70 (MQ=255) cACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCat < 1:3445638/55‑1 (MQ=255) cACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCat < 1:1655440/55‑1 (MQ=255) cACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCg > 1:4522666/1‑70 (MQ=255) cACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGa < 1:246090/71‑1 (MQ=255) cACTTCGGTATATAT‑‑CGCAGTCACGATTTATATACTTTCACTGGGTCATCGTCat < 1:6813852/55‑1 (MQ=255) aCTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGaa > 1:4570075/1‑71 (MQ=255) tGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATcc > 1:804264‑M1/2‑69 (MQ=255) GTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATcc < 1:1456424‑M1/68‑1 (MQ=255) GTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGa < 1:545416‑M1/71‑1 (MQ=255) GTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGa < 1:4812584‑M1/71‑1 (MQ=255) | CAATACTATTAGCCAGTGGCTAACATTGCAAGAATTAGCGATTTCTTCAGCTGGCGGAGGGAGCACTTCGGTATATAT‑‑CGCAGTGACGATTTATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGA > AP009048/3992127‑3992267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |