| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4918 = | 60 (0.740) | 5 (0.070) | 3/84 | NT | 8.7% | coding (1185/1287 nt) | thrC | threonine synthase |
| ? | AP009048 | 4939 = | 53 (0.760) | coding (1206/1287 nt) | thrC | threonine synthase | |||||
GGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAATTGATGAT > AP009048/4870‑5007 | ggCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAAc > 1:5039629/1‑71 (MQ=255) cGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGt > 1:6666844/1‑71 (MQ=255) aaaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc > 1:3236602/1‑71 (MQ=255) aaaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc > 1:7788097/1‑71 (MQ=255) aaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:5596612/1‑71 (MQ=255) aaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:2497503/1‑71 (MQ=255) aTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACg > 1:5434006/1‑66 (MQ=255) aTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:6921023/1‑70 (MQ=255) ttAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAt > 1:1042357/1‑71 (MQ=255) aaaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt < 1:5832305/70‑1 (MQ=255) aaaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt < 1:421056/70‑1 (MQ=255) aaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTa < 1:6070396/71‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:827560/71‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:2322517/71‑1 (MQ=255) tGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt < 1:3000322/71‑1 (MQ=255) tGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt < 1:657057/71‑1 (MQ=255) gAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc < 1:7122779/71‑1 (MQ=255) aGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCttt < 1:2148190/68‑1 (MQ=255) aGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTca < 1:2318609/70‑1 (MQ=255) cGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACAt < 1:5459792/71‑1 (MQ=255) cGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACAt < 1:3716713/71‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:5129393/58‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:788520/58‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:5848635/58‑1 (MQ=255) aTTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATaa < 1:2937154/71‑1 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGa > 1:3761573/1‑49 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGa > 1:335745/1‑49 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc > 1:2102742/1‑56 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc > 1:739169/1‑56 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt > 1:7860275/1‑62 (MQ=255) ttCTCGCTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt > 1:13106/1‑71 (MQ=255) tcGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAt < 1:7763986/47‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:6559309/43‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:862586/43‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:2644661/43‑1 (MQ=255) gTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt > 1:117875/1‑65 (MQ=255) tGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTa > 1:6640655/1‑46 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc < 1:548435/38‑1 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCccgc > 1:1932713/1‑71 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCccgc > 1:3632346/1‑71 (MQ=255) gTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:6403160/71‑1 (MQ=255) gTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:6430040/71‑1 (MQ=255) ttGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACGCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:1456381/70‑1 (MQ=255) ttGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAttt < 1:4937119/71‑1 (MQ=255) ggATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt > 1:592777/1‑35 (MQ=255) ggATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt > 1:5270922/1‑35 (MQ=255) aTCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:2470107/40‑1 (MQ=255) aTCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:1009335/40‑1 (MQ=255) tctgccagctcttttggcagaACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTtgct > 1:3729468‑M2/22‑70 (MQ=255) CTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt > 1:2803151‑M1/1‑42 (MQ=255) tgccagctcttttggcagaACGTGCTGATTTACCCTTGCTTTCACATAATCTGc > 1:7569382‑M2/20‑54 (MQ=255) tgccagctcttttggcagaACGTGCTGATTTACCCTTGCTTTCACATAATCTGc > 1:1057810‑M2/20‑54 (MQ=255) tgccagctcttttggcagaACGTGCTGATTTACCCTTGCTTTCACATAATCTGc > 1:5292744‑M2/20‑54 (MQ=255) GCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCt < 1:980043‑M1/51‑1 (MQ=255) GCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCt < 1:2518681‑M1/51‑1 (MQ=255) GCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGccc > 1:3671027‑M1/1‑55 (MQ=255) ccagctcttttggcagaACGTGCTGATTTACCCTTGCtt < 1:3005743‑M2/22‑1 (MQ=255) CCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATa > 1:2513543‑M1/1‑46 (MQ=255) CCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGc > 1:3628720‑M1/1‑52 (MQ=255) CCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTtgctg > 1:2462939‑M1/1‑67 (MQ=255) CCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCg > 1:4723928‑M1/1‑69 (MQ=255) CCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCg > 1:4351937‑M1/1‑69 (MQ=255) CAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATa > 1:2859797‑M1/1‑45 (MQ=255) AAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc > 1:3834006‑M1/1‑39 (MQ=255) AAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCTCCGATTTTGCTGCg > 1:6182998‑M1/1‑67 (MQ=255) AAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCg > 1:2890730‑M1/1‑67 (MQ=255) AAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCg > 1:3297356‑M1/1‑67 (MQ=255) AAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGc > 1:2430930‑M1/1‑71 (MQ=255) aaaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt < 1:3229027/45‑1 (MQ=255) aaaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt < 1:1744942/45‑1 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCttt < 1:900869/36‑1 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc > 1:1383480/1‑37 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc > 1:2351466/1‑37 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc > 1:2370037/1‑37 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc < 1:7375822/37‑1 (MQ=255) aaGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCtgcgttgcg > 1:5429848/1‑70 (MQ=255) agagCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTa < 1:3779054/71‑1 (MQ=255) agagCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTa < 1:6541238/71‑1 (MQ=255) cTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAAtt < 1:3710372/71‑1 (MQ=255) ggcagaACGTGCTGATTTACCCTTGCTTTCACATa > 1:2663875‑M2/7‑35 (MQ=255) ggcagaACGTGCTGATTTACCCTTGCTTTCACATa > 1:2267353‑M2/7‑35 (MQ=255) gcagaACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAATtgat > 1:4536748‑M2/6‑71 (MQ=255) agaACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAATtgatga < 1:6389397‑M2/68‑1 (MQ=255) aACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAATtgatgat < 1:2460747‑M2/69‑1 (MQ=255) | GGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAATTGATGAT > AP009048/4870‑5007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |