| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 236798 | 56 (0.690) | 137 (3.750) +TTTAATATCAGTAAACCGGACATAACC |
47/44 | NT | 80.7% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | AP009048 | 4124502 = | 90 (1.110) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 401 total aligned reads displayed.
TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > AP009048/4124436‑4124571 | gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa < 1:4207457‑M2/2‑1 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag < 1:5128080‑M2/7‑1 (MQ=255) cTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaag > 1:4404683/1‑70 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa < 1:874535‑M2/2‑1 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:3012268‑M2/10‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:6348440/1‑70 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1330362‑M2/12‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:5704566‑M2/12‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:5977366/71‑1 (MQ=255) gcgcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAAt < 1:6653566/71‑1 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcg > 1:7386305‑M2/57‑71 (MQ=255) ggATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCgcgc > 1:3469331/1‑71 (MQ=255) gcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc > 1:250865‑M2/54‑67 (MQ=255) cggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:1001693‑M2/14‑1 (MQ=255) ggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt > 1:679322‑M2/52‑71 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:4765310‑M2/21‑1 (MQ=255) aagttgcctcttgcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:6018430‑M2/22‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:2702809‑M2/22‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:168286‑M2/22‑1 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt > 1:115446/1‑71 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt < 1:775867‑M2/23‑1 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt < 1:6951764‑M2/23‑1 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:3103687‑M2/49‑71 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:4501367‑M2/24‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:5832744‑M2/24‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:5945894‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3884211‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:7342842‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:2251980‑M2/46‑70 (MQ=255) tCGGAGCTTTCTCCACAGACGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttttt < 1:7595583/69‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:6572337‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTATTTTg > 1:4901082‑M2/45‑69 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:4691014‑M2/28‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:3376258‑M2/28‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:5780650‑M2/24‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:1435590‑M2/24‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:5467304‑M2/25‑1 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATgaagaa > 1:7221950‑M2/41‑49 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:633284‑M2/41‑71 (MQ=255) tggcgaggataatttaatatgagtaaaccggtcataaccCATGAAGaaaaa < 1:4829126‑M2/12‑1 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:4099442‑M2/40‑71 (MQ=255) cTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc < 1:708631/53‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2095932‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:7201358‑M2/31‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:7899198‑M2/33‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:6472922‑M2/34‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCa > 1:3637335/1‑38 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:3214267‑M2/36‑71 (MQ=255) aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:6527537/1‑69 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGaaaa > 1:2200705‑M2/29‑39 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:4468339‑M2/42‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:3792884‑M2/29‑71 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:6192606‑M2/42‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:4966197‑M2/28‑70 (MQ=255) ttaatatcagtaaaccggacataacgCATGAAGAAAAATCGCGCTTTTTTGa < 1:7304058‑M2/26‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:4144311‑M2/27‑54 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa < 1:5225599‑M2/45‑1 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:3735603‑M2/26‑71 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:3266007‑M2/26‑71 (MQ=255) ggAGAATGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt < 1:3584601/71‑1 (MQ=255) ggAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt < 1:1224251/71‑1 (MQ=255) gagaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:4548220/1‑60 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:1829419‑M2/24‑39 (MQ=255) agaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:2452668/71‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa > 1:7143454‑M2/23‑64 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:4354362‑M2/21‑71 (MQ=255) ggTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATACCCTg < 1:1565591/71‑1 (MQ=255) cagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt < 1:5027803‑M2/23‑1 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:5335299‑M2/19‑58 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc > 1:5380672/1‑65 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:6091745‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:4866788‑M2/20‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:3689526‑M2/20‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:7687566‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2152717‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:4276951‑M2/40‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:1907725‑M2/17‑71 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:7644215/41‑1 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt < 1:6294870/70‑1 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTATGAAGTGGGCAGGGGGCAAGt > 1:7432045‑M2/16‑59 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:2011963‑M2/15‑37 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:3157139‑M2/15‑37 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg < 1:1946063‑M2/38‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:3541040‑M2/14‑38 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:4516701‑M2/58‑1 (MQ=255) aTTAGTTAGTCAGGATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:7484847/1‑65 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:2942334/55‑1 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:3303828‑M2/27‑1 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:4714769‑M2/60‑1 (MQ=255) gttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGata > 1:6388883/1‑71 (MQ=255) acataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGatat < 1:2585509‑M2/63‑1 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGatat > 1:701480‑M2/8‑70 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaa < 1:6685190/71‑1 (MQ=255) tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa < 1:557728/71‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2335542‑M2/5‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:2834900‑M2/4‑71 (MQ=255) ccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:7541012‑M2/3‑39 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg < 1:4645102/71‑1 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:6609345/1‑71 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:6844460/1‑35 (MQ=255) | TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > AP009048/4124436‑4124571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |