| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 392207 = | 153 (1.880) | 8 (0.110) | 4/84 | NT | 5.9% | intergenic (‑73/‑32) | insE/yaiU | IS3 element protein/hypothetical protein |
| ? | AP009048 | 392243 = | 125 (1.790) | coding (5/1404 nt) | yaiU | hypothetical protein | |||||
Only 100 of 220 total aligned reads displayed.
TTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACATC > AP009048/392175‑392313 | ttGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa < 1:3368046/69‑1 (MQ=255)ttGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtg > 1:5903696/1‑71 (MQ=255)ttGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAt < 1:5192468/70‑1 (MQ=255)agctccagtatcgaactgatcaacgttcacatCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtg > 1:5638500‑M1/33‑71 (MQ=255) tGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgt > 1:440624/1‑71 (MQ=255) tGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgtg < 1:4869334/69‑1 (MQ=255) tGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgtg < 1:3195830/69‑1 (MQ=255) tGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa > 1:2777107/1‑71 (MQ=255) gggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAAc > 1:1178151/1‑71 (MQ=255) gggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAAc > 1:2099923/1‑71 (MQ=255) ggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg > 1:5970587/1‑71 (MQ=255) ggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg < 1:1997349/71‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:834893/71‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt > 1:4079143/1‑71 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:3437296/71‑1 (MQ=255) tAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:1136803/70‑1 (MQ=255) atcgaactgatcaacgttcacatCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa < 1:505196‑M1/37‑1 (MQ=255) atcgaactgatcaacgttcacatCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa < 1:549789‑M1/37‑1 (MQ=255) aGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGa > 1:1188402/1‑71 (MQ=255) aGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGa > 1:2986447/1‑71 (MQ=255) tCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGAt > 1:4531804/1‑69 (MQ=255) cAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgtg > 1:2132373/1‑59 (MQ=255) cAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg > 1:2075513/1‑71 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:3718539/70‑1 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:6144984/70‑1 (MQ=255) gATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGt > 1:1002101/1‑70 (MQ=255) aTTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTg > 1:4823419/1‑63 (MQ=255) aTTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGta > 1:5306761/1‑69 (MQ=255) aTTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTc < 1:6672901/71‑1 (MQ=255) ttACAACCTGTACGCCAATACTTTCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCg < 1:7529878/71‑1 (MQ=255) ttACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTc < 1:6861071/70‑1 (MQ=255) ttACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCg < 1:2715981/71‑1 (MQ=255) tACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:6489983/1‑71 (MQ=255) aCAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa > 1:6428766/1‑55 (MQ=255) aCAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTg > 1:2207922/1‑60 (MQ=255) cAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa < 1:2389082/69‑1 (MQ=255) aaCCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg > 1:2933634/1‑55 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTTAACGTTGATCAGTTCGATACTg < 1:5670495/71‑1 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTg < 1:2833239/71‑1 (MQ=255) tGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:742282/1‑64 (MQ=255) tGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:5082108/1‑64 (MQ=255) gTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa < 1:3410252/48‑1 (MQ=255) aCGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa > 1:4603723/1‑40 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCtt > 1:2322478/1‑71 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCtt > 1:7216280/1‑71 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:1522320/70‑1 (MQ=255) cGCCAATACTATAACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:1773431/70‑1 (MQ=255) gCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg > 1:5734054/1‑46 (MQ=255) CCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTc > 1:3087623‑M1/1‑71 (MQ=255) CAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa < 1:1343051‑M1/57‑1 (MQ=255) CAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa < 1:4174692‑M1/57‑1 (MQ=255) CAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTcc > 1:6990341‑M1/1‑71 (MQ=255) CAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTcc < 1:6033705‑M1/71‑1 (MQ=255) AATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCg > 1:3893890‑M1/1‑71 (MQ=255) AATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCg > 1:6739602‑M1/1‑71 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCg > 1:3151725‑M1/1‑70 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:7391835‑M1/1‑71 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:4223242‑M1/1‑71 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:367331‑M1/1‑71 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:3264469‑M1/1‑71 (MQ=255) ATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:2645282‑M1/1‑71 (MQ=255) TACTATCACCGTAACTAACGGCGGAGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGt > 1:6158603‑M1/1‑70 (MQ=255) tATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTAc > 1:5320824/1‑69 (MQ=255) tCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGa > 1:6356321/1‑70 (MQ=255) tCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGa > 1:5410711/1‑70 (MQ=255) tCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGa > 1:2753595/1‑70 (MQ=255) cgccgttagttacggtgatagtattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTAc > 1:7495267‑M2/28‑67 (MQ=255) cACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTACGATACTGAAGCTTTCCGTACTGAc > 1:7703127/1‑70 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACaa < 1:5246195/71‑1 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACaa < 1:1950173/71‑1 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACa < 1:5665339/70‑1 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACa > 1:7158495/1‑70 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACa < 1:2510401/70‑1 (MQ=255) aCCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACa < 1:4357436/70‑1 (MQ=255) ccGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTc < 1:5777892/44‑1 (MQ=255) ccGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATa < 1:4943614/48‑1 (MQ=255) cGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACa < 1:123180/68‑1 (MQ=255) cGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAAc < 1:2571288/71‑1 (MQ=255) taactaacGGCGGTGTATTGGATGTGAACGTTGATCAGt < 1:246757/39‑1 (MQ=255) taactaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGa > 1:6592218/1‑64 (MQ=255) aactaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTg > 1:692753/1‑70 (MQ=255) actaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCg > 1:1592104/1‑56 (MQ=255) actaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTgg < 1:3879502/70‑1 (MQ=255) actaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTgg > 1:5941042/1‑70 (MQ=255) ctaacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGaa < 1:3546813/71‑1 (MQ=255) taacGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:2586549/49‑1 (MQ=255) acGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTg < 1:2792998/71‑1 (MQ=255) tgtATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGa < 1:5569271/60‑1 (MQ=255) tattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTa < 1:6104378‑M2/39‑1 (MQ=255) tattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGa < 1:4740634‑M2/52‑1 (MQ=255) tattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGc < 1:7084768‑M2/65‑1 (MQ=255) tattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGc < 1:7488637‑M2/65‑1 (MQ=255) ttggATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:365686‑M2/32‑1 (MQ=255) ttggATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:163003‑M2/32‑1 (MQ=255) ttggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGa > 1:5722502‑M2/5‑61 (MQ=255) ttggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCa < 1:7154574‑M2/66‑1 (MQ=255) ggATGTGAACGTTGATCAGTTCGATACTGAAGCttt > 1:6233613‑M2/3‑36 (MQ=255) ggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTcc > 1:5066780‑M2/3‑38 (MQ=255) gATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACa < 1:2274823‑M2/69‑1 (MQ=255) aTGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCg < 1:4371887/63‑1 (MQ=255) | TTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACATC > AP009048/392175‑392313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |