| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3690776 = | NA (NA) | 5 (0.060) | 4/96 | NT | NA | noncoding (2202/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | AP009048 | 3690795 = | NA (NA) | noncoding (2183/2904 nt) | rrlC | 23S ribosomal RNA | |||||
CCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTC > AP009048/3690727‑3690837 | ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:4336438/70‑1 (MQ=40) cAGTCAAACTACCCACCAGCCACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAtt > 1:60598/1‑68 (MQ=255) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:3331417/1‑69 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:5457675/1‑69 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:1535939/1‑69 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:546836/1‑69 (MQ=40) tCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:7448667/71‑1 (MQ=39) tCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:569229/71‑1 (MQ=39) tCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:7342052/71‑1 (MQ=39) tCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg < 1:7742885/70‑1 (MQ=40) tCAAACTACCCACAAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgtg < 1:649098/71‑3 (MQ=255) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg > 1:916886/1‑71 (MQ=39) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg > 1:4036290/1‑71 (MQ=39) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg > 1:4098543/1‑71 (MQ=39) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg > 1:6007985/1‑71 (MQ=39) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg > 1:7616237/1‑71 (MQ=39) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggt < 1:3309148/70‑1 (MQ=40) aCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:3510932/1‑70 (MQ=40) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa < 1:5939903/71‑1 (MQ=39) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa > 1:7928088/1‑71 (MQ=39) cccACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAttt < 1:1946680/71‑1 (MQ=39) cccACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAtt < 1:1827434/70‑1 (MQ=40) cccACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAtt < 1:1818082/70‑1 (MQ=40) caccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTc > 1:6496256/1‑70 (MQ=40) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAtt < 1:1309359/53‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAtt < 1:4329558/53‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAtt < 1:4994512/53‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAg > 1:2225784/1‑71 (MQ=39) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAg > 1:7348932/1‑71 (MQ=39) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGATATTTCAAg > 1:3551153/1‑71 (MQ=255) caGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg > 1:1452320/1‑71 (MQ=39) caGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg < 1:6651970/71‑1 (MQ=39) aGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa > 1:2816538/1‑68 (MQ=40) aGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAggg < 1:7127192/71‑2 (MQ=39) aGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:220992/1‑71 (MQ=39) gACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTc < 1:4625038/65‑1 (MQ=40) gACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc > 1:3775681/1‑71 (MQ=39) acacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg > 1:1277672/1‑71 (MQ=39) cacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg > 1:2436259/1‑70 (MQ=40) cacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:6612073/70‑1 (MQ=40) cTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:4071353/71‑1 (MQ=39) cTGTCCGAAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt > 1:368120/1‑71 (MQ=255) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCCAGGTCg < 1:16208/67‑1 (MQ=255) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:1913629/67‑1 (MQ=40) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:5468511/1‑71 (MQ=39) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:1333980/1‑71 (MQ=39) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:7308647/1‑71 (MQ=39) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgga > 1:3605937/1‑63 (MQ=255) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:4568596/1‑64 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:5776817/1‑64 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc < 1:3059265/65‑1 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc < 1:656246/65‑1 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc < 1:3756405/65‑1 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:7288089/1‑70 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:5016632/1‑70 (MQ=40) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:5283641/1‑70 (MQ=40) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:6490248/44‑1 (MQ=255) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:3277234/44‑1 (MQ=255) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:1531629/44‑1 (MQ=255) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:417842/44‑1 (MQ=255) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTcc < 1:2486088/70‑1 (MQ=40) ccGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt > 1:4123656/1‑71 (MQ=39) cGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt < 1:7438725/70‑1 (MQ=40) cGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt < 1:1226415/70‑1 (MQ=40) cGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg < 1:661085/71‑1 (MQ=39) gCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATAAAAGggtg > 1:5414317/1‑48 (MQ=255) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt > 1:589507/1‑64 (MQ=40) aaCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt < 1:3780319/58‑1 (MQ=255) aCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAg > 1:2642029/1‑41 (MQ=255) cccGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc < 1:2814787/71‑1 (MQ=39) cccGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc > 1:7297048/1‑71 (MQ=39) ccGGATCACGGGTCCACGTTAGAACATCAAACATTaa > 1:4400242/1‑37 (MQ=255) cGGATCACGGGTCCACGTTTGAACATCAAACATTa < 1:2619910/35‑1 (MQ=255) cGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:2256546/50‑1 (MQ=255) cGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTg < 1:6727363/71‑1 (MQ=39) ggATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTgg < 1:7656746/71‑1 (MQ=39) ggATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTg > 1:1417012/1‑70 (MQ=40) gATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg > 1:3410220/1‑55 (MQ=255) gATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGc < 1:2506936/71‑1 (MQ=39) gATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGc < 1:499866/71‑1 (MQ=39) aTCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg > 1:7266643/1‑54 (MQ=255) aTCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCg < 1:50217/71‑1 (MQ=39) tCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt < 1:6398567/71‑1 (MQ=38) cACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCg > 1:4750054/1‑69 (MQ=37) cACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCg > 1:1540638/1‑69 (MQ=37) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt < 1:7853654/69‑1 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:3239391/70‑1 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:5898755/70‑1 (MQ=35) ggTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTc < 1:3443585/40‑1 (MQ=40) ggTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc < 1:5965984/60‑1 (MQ=35) gTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc < 1:4482916/59‑1 (MQ=35) ccACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGa > 1:188212/1‑56 (MQ=33) ccACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGa > 1:7315146/1‑56 (MQ=33) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:5313791/46‑1 (MQ=32) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGc > 1:7653027/1‑60 (MQ=31) | CCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTC > AP009048/3690727‑3690837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |