BRESEQ :: Evidence

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AP009048	573865–575008	575999	992–2135	17 [15]	[0] 161	insH–[nmpC]	insH,[nmpC]

Only 100 of 161 total aligned reads displayed.

ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC  >  AP009048/575930‑576068

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:265784‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:3840462‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:2856268‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:5351768‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      <  1:5546913‑M2/1‑1 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:3956429‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:290401‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      <  1:4116638‑M2/1‑1 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:6846848‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:2929018‑M2/71‑71 (MQ=255)

atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:668735‑M2/71‑71 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:4893181‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:2404665‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:4520311‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:3573223‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:3818260‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:382448‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:4218761‑M2/2‑1 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:462265‑M2/70‑70 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:4192352‑M2/70‑70 (MQ=255)

 tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:5062520‑M2/70‑70 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:1317521‑M2/2‑1 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     >  1:1860025‑M2/69‑70 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:3666770‑M2/69‑69 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:264588‑M2/69‑69 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:800947‑M2/69‑69 (MQ=255)

  gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      >  1:6412991‑M2/69‑69 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    <  1:3067404‑M2/3‑1 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    >  1:499925‑M2/68‑70 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:1626514‑M2/4‑1 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:334453‑M2/4‑1 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:244833‑M2/4‑1 (MQ=255)

   atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:3594928‑M2/4‑1 (MQ=255)

    tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:4676165‑M2/2‑1 (MQ=255)

    tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:2371994‑M2/2‑1 (MQ=255)

     gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    >  1:3020709‑M2/66‑68 (MQ=255)

     gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa                                                                 >  1:7424382‑M2/66‑71 (MQ=255)

       accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt                                                               >  1:4169818‑M2/64‑71 (MQ=255)

       accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt                                                               <  1:6491315‑M2/8‑1 (MQ=255)

          ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGAt                                                            >  1:1337094‑M2/61‑71 (MQ=255)

             ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:6071498‑M2/2‑1 (MQ=255)

             ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:594012‑M2/2‑1 (MQ=255)

              tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcagcttcct                                                                      <  1:15629‑M2/1‑1 (MQ=255)

              tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                      <  1:2104908‑M2/1‑1 (MQ=255)

                tatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:1124189‑M2/4‑1 (MQ=255)

                  tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    <  1:1454646‑M2/3‑1 (MQ=255)

                  tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa                                                     <  1:4200714‑M2/18‑1 (MQ=255)

                   ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCa                                                         <  1:5776483‑M2/14‑1 (MQ=255)

                   ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCa                                                         <  1:6617961‑M2/14‑1 (MQ=255)

                   ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCa                                                         <  1:7807411‑M2/14‑1 (MQ=255)

                    gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc                                                                >  1:4006510‑M2/51‑57 (MQ=255)

                    gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc                                                                >  1:6462703‑M2/51‑57 (MQ=255)

                       ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    <  1:5604095‑M2/3‑1 (MQ=255)

                       ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa                                                                 >  1:4114837‑M2/48‑53 (MQ=255)

                       ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc                                                                >  1:2079463‑M2/48‑54 (MQ=255)

                       ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag                                                  >  1:6288668‑M2/48‑68 (MQ=255)

                        cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg                                                           <  1:4986878‑M2/12‑1 (MQ=255)

                        cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg                                                           <  1:3049149‑M2/12‑1 (MQ=255)

                         agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:531360‑M2/4‑1 (MQ=255)

                         agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   <  1:1175542‑M2/4‑1 (MQ=255)

                           atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa                                            >  1:6213631‑M2/44‑70 (MQ=255)

                            tgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:4097543‑M2/2‑1 (MQ=255)

                             gacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                    >  1:3097586‑M2/42‑44 (MQ=255)

                              acaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                   >  1:3923816‑M2/41‑44 (MQ=255)

                              acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg                                         <  1:6675433‑M2/30‑1 (MQ=255)

                              acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc                                        <  1:7158343‑M2/31‑1 (MQ=255)

                               caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc                                       <  1:6070888‑M2/32‑1 (MQ=255)

                               caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc                                       <  1:347566‑M2/32‑1 (MQ=255)

                                aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa                                      >  1:2255454‑M2/39‑71 (MQ=255)

                                 aacatgatctcatatcagggacttgttcgcaccttcct                                                                      <  1:7269943‑M2/1‑1 (MQ=255)

                                  acatgatctcatatcagggacttgttcgcaccttcctt                                                                     >  1:3223835‑M2/37‑38 (MQ=255)

                                  acatgatctcatatcagggacttgttcgcaccttcct                                                                      <  1:6301129‑M2/1‑1 (MQ=255)

                                  acatgatctcataccagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt                                          >  1:1984549‑M2/37‑65 (MQ=255)

                                   catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg                                   <  1:277532‑M2/36‑1 (MQ=255)

                                   catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg                                   <  1:2975481‑M2/36‑1 (MQ=255)

                                    atgatctcatatcagggacttgttcgcaccttcctt                                                                     <  1:3127012‑M2/2‑1 (MQ=255)

                                    atgatctcatatcagggacttgttcgcaccttccTTAGt                                                                  >  1:5336930‑M2/35‑39 (MQ=255)

                                    atgatctcatatcagggacttgttcgcaccttccTTAGTa                                                                 >  1:6539054‑M2/35‑40 (MQ=255)

                                    atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca                                                >  1:6908675‑M2/35‑57 (MQ=255)

                                    atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca                                                >  1:7782185‑M2/35‑57 (MQ=255)

                                    atgatcgcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca                                                >  1:1583‑M2/35‑57 (MQ=255)

                                     tgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGtt                                 <  1:174917‑M2/38‑1 (MQ=255)

                                      atgatctcatatcagggacttgttcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGtt                                 >  1:4369675‑M2/33‑70 (MQ=255)

                                       atctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa                                             >  1:4238500‑M2/32‑57 (MQ=255)

                                        tctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa                                                     >  1:3716357‑M2/31‑48 (MQ=255)

                                          tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa                                              <  1:6403377‑M2/25‑1 (MQ=255)

                                           catattagggacttgttcgcaccttccTTAGTACTAATGCAGCTACAGCAGAAATTGCCa                                      >  1:6377976‑M2/28‑60 (MQ=255)

                                           catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa                                      >  1:4715394‑M2/28‑60 (MQ=255)

                                               tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa                                              <  1:3265859‑M2/25‑1 (MQ=255)

                                               tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa                       >  1:1773428‑M2/24‑71 (MQ=255)

                                                   ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGGAATTGCCACTGTTAATTTTTTCATCGt                   <  1:3885772‑M2/52‑1 (MQ=255)

                                                   ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt                   <  1:3398747‑M2/52‑1 (MQ=255)

                                                       ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa                                             >  1:1826781‑M2/16‑41 (MQ=255)

                                                         gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc                                        >  1:2225044‑M2/14‑44 (MQ=255)

                                                            cgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt                                          >  1:5873009‑M2/11‑39 (MQ=255)

                                                              caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt        >  1:5021852‑M2/9‑71 (MQ=255)

                                                                 cttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttt          <  1:3733608‑M2/61‑1 (MQ=255)

                                                                    ccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGa    <  1:6462177‑M2/67‑1 (MQ=255)

                                                                     cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAt                              >  1:3310465‑M2/2‑42 (MQ=255)

                                                                     cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAt                              >  1:6571981‑M2/2‑42 (MQ=255)

ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC  >  AP009048/575930‑576068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`