| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,214,649 | T→A | 5.6% | K167* (AAA→TAA) | yqjH ← | predicted siderophore interacting protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,214,649 | 0 | T | A | 5.6% | 351.6 / 7.9 | 122 | K167* (AAA→TAA) | yqjH | predicted siderophore interacting protein |
| Reads supporting (aligned to +/- strand): ref base T (50/65); new base A (2/5); total (52/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 136 total aligned reads displayed.
CCATCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGCAGA > AP009048/3214579‑3214714 | ccATCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:2249039/71‑1 (MQ=255)ccATCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:2118153/71‑1 (MQ=255) cATCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:4729187/70‑1 (MQ=255) aTCAAGGTGCGCTAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTaa < 1:1703015/71‑1 (MQ=255) aTCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTaa < 1:7761955/71‑1 (MQ=255) aTCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTaa > 1:2540008/1‑71 (MQ=255) aTCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTaa < 1:18910/71‑1 (MQ=255) aaGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACgg > 1:126811/1‑71 (MQ=255) aaGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACg > 1:7115298/1‑70 (MQ=255) aaGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACg < 1:488991/70‑1 (MQ=255) aGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc < 1:6617761/71‑1 (MQ=255) aGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc < 1:1949251/71‑1 (MQ=255) aGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc < 1:4715029/71‑1 (MQ=255) aGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc < 1:3905668/71‑1 (MQ=255) gTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCaa < 1:4638950/71‑1 (MQ=255) gTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCaa < 1:6952460/71‑1 (MQ=255) tGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTaa < 1:4878674/64‑1 (MQ=255) tGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAg > 1:4227742/1‑71 (MQ=255) cgcgAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGtt < 1:410971/71‑1 (MQ=255) cgcgAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGt < 1:3257814/70‑1 (MQ=255) cgAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTg < 1:7154654/71‑1 (MQ=255) gagaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc > 1:881650/1‑63 (MQ=255) gagaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGc > 1:323997/1‑63 (MQ=255) gagaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGc > 1:479798/1‑71 (MQ=255) gagaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGc < 1:699624/71‑1 (MQ=255) agaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:3768628/56‑1 (MQ=255) agaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:3700448/56‑1 (MQ=255) agaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGttt < 1:5456035/56‑1 (MQ=255) agaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCCGTTAAACCGCAAGtta > 1:5821456/1‑67 (MQ=37) gaTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTc < 1:4412953/71‑1 (MQ=255) aTAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCa < 1:4391250/71‑1 (MQ=255) tAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCaa > 1:3051938/1‑71 (MQ=255) aTCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCCGTTAAAc < 1:2178707/54‑1 (MQ=255) tCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGt < 1:2723312/71‑1 (MQ=255) tCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGt < 1:4061810/71‑1 (MQ=255) tCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGt < 1:4652416/71‑1 (MQ=255) ccTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAAc > 1:1930183/1‑52 (MQ=255) ccTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAAc > 1:3709851/1‑52 (MQ=255) ccTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGtt > 1:4587499/1‑71 (MQ=255) cTGACAGTCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGtt < 1:3589148/70‑1 (MQ=255) cTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGttt < 1:2583473/71‑1 (MQ=255) cTGACAGGCGTTATCCCGCACGCTAACCAGAGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGttt < 1:6051604/71‑1 (MQ=255) gACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTc > 1:1158395/1‑70 (MQ=255) aCAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTc > 1:3495170/1‑69 (MQ=255) aCAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTc > 1:2487571/1‑69 (MQ=255) gCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACgg > 1:5942197/1‑46 (MQ=255) gCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGtt > 1:1172295/1‑52 (MQ=255) gCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGtt > 1:4934572/1‑52 (MQ=255) gCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcg < 1:729076/71‑1 (MQ=255) cGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcgg > 1:2367645/1‑71 (MQ=255) gTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggc > 1:1529672/1‑71 (MQ=255) ttATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCa < 1:5428092/45‑1 (MQ=255) ttATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCa < 1:5251706/45‑1 (MQ=255) ttATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCa < 1:2966689/45‑1 (MQ=255) aTCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggcggc > 1:6939003/1‑71 (MQ=255) aTCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggcggc > 1:5978436/1‑71 (MQ=255) aTCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggcggc > 1:7648422/1‑71 (MQ=255) tCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGgcggcggcg < 1:1336421/71‑1 (MQ=255) tCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGgcggcggcg < 1:1843060/71‑1 (MQ=255) ccGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGgcgc > 1:341296/1‑70 (MQ=255) cGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCaa > 1:6427550/1‑71 (MQ=255) gCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCaa > 1:3226167/1‑49 (MQ=255) gCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTcc > 1:3275578/1‑56 (MQ=255) gCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAAt > 1:7564235/1‑71 (MQ=255) gCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAAt > 1:723775/1‑71 (MQ=255) gCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAAt > 1:5700205/1‑71 (MQ=255) aCGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGc < 1:812051/71‑1 (MQ=255) gCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAg > 1:1871034/1‑54 (MQ=255) tAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAgg > 1:4268260/1‑70 (MQ=255) aCCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCAt > 1:2718928/1‑71 (MQ=255) cAGCGCAGTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTc < 1:715596/45‑1 (MQ=255) cAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTc < 1:2131394/45‑1 (MQ=255) aGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTcc < 1:7306876/71‑1 (MQ=255) gcgcACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCa > 1:4427409/1‑45 (MQ=255) gcgcACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCg > 1:4031117/1‑71 (MQ=255) gcACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATg > 1:7437647/1‑58 (MQ=255) gcACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGa < 1:1340416/71‑1 (MQ=255) cACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGAt < 1:988157/71‑1 (MQ=255) cTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAggc < 1:1313178/43‑1 (MQ=255) cTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTc < 1:5238193/71‑1 (MQ=255) aaaCTTGCCGTTAAACCGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGAt < 1:1499304/67‑1 (MQ=37) aaaCTTGCCGTTAAACCGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGAt < 1:922363/67‑1 (MQ=37) aaCTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCAt > 1:5242404/1‑71 (MQ=255) aCTTGCGGTTTAACTGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCAt < 1:1240053/70‑1 (MQ=255) cTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAgg < 1:6271739/55‑1 (MQ=255) cTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAgg < 1:1320457/55‑1 (MQ=255) cTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCg < 1:3494692/71‑1 (MQ=255) ttGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTc < 1:572812/66‑1 (MQ=255) ttGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTc < 1:6755246/66‑1 (MQ=255) tGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCg > 1:823269/1‑69 (MQ=255) gCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGc < 1:5655827/69‑1 (MQ=255) gCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGc < 1:3912337/69‑1 (MQ=255) cGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGCAGa > 1:7629837/1‑71 (MQ=255) cGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGCAGa < 1:100814/71‑1 (MQ=255) cGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTACGGATTCATCGCAg < 1:3565570/70‑1 (MQ=255) ggTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggc < 1:7657910/37‑1 (MQ=255) ggTTTAACGGCAAGTTTGCTCAACGTTTCCAggcggc < 1:3862199/37‑1 (MQ=255) tttAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGgcgcga > 1:2325673/1‑40 (MQ=255) tttAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAg > 1:7833236/1‑47 (MQ=255) tttAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAg > 1:7761669/1‑47 (MQ=255) | CCATCAAGGTGCGCGAGATAATCCTGACAGGCGTTATCCCGCACGCTAACCAGCGCACTAACTTGCGGTTTAACGGCAAGTTTGCTCAACGTTTCCAGGCGGCGGCGCAATGCAGGCATTCCGGATTCATCGCAGA > AP009048/3214579‑3214714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |