| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,685,038 | 0 | C | T | 100.0% | 526.6 / NA | 170 | pseudogene (21/582 nt) pseudogene (1084/1645 nt) | ilvG ilvG | ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (88/82); total (88/82) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 170 total aligned reads displayed.
TGCTGCGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATGTT > AP009048/3684970‑3685105 | tgctgcGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGa > 1:3522035/1‑71 (MQ=255)tgctgcGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGa > 1:7426961/1‑71 (MQ=255) tgcGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg > 1:4104291/1‑71 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:6723244/71‑1 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg > 1:748623/1‑71 (MQ=255) cAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACTACGCAATCCGCAGGTTTACGATCTGACAgttgt > 1:838162/1‑71 (MQ=255) cAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgt > 1:7702324/1‑71 (MQ=255) aGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgtt > 1:2379083/1‑71 (MQ=255) gCCCACCTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt > 1:4409/1‑71 (MQ=255) gCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:6038749/68‑1 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:6925303/66‑1 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:4303022/71‑1 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:4812465/70‑1 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt < 1:638476/61‑1 (MQ=255) tCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACa < 1:3196004/57‑1 (MQ=255) tCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:7647450/1‑70 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt < 1:4338190/63‑1 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac > 1:3264032/1‑70 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac > 1:6233350/1‑70 (MQ=255) tGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa > 1:6012046/1‑71 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt < 1:7605590/55‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt < 1:5715550/55‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt < 1:7676697/55‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac < 1:5947166/67‑1 (MQ=255) gctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgc > 1:4881809/1‑71 (MQ=255) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt < 1:2426761/57‑1 (MQ=255) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt < 1:1728070/57‑1 (MQ=255) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTGTtaaaacaactgt < 1:6026880/70‑4 (MQ=38) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTGTtaaaacaactgt < 1:5878069/70‑4 (MQ=38) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac < 1:1208396/64‑1 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac < 1:3939763/64‑1 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:1281355/1‑70 (MQ=255) gccAGATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaac < 1:7346908/56‑1 (MQ=39) cacaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGt < 1:5003216/68‑1 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:5191542/1‑70 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:5380082/1‑70 (MQ=255) aTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca > 1:7549251/1‑53 (MQ=255) aTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca > 1:1074439/1‑53 (MQ=255) tCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGa > 1:3728775/1‑38 (MQ=255) tCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGa > 1:3064380/1‑38 (MQ=255) cTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCg > 1:4385249/1‑71 (MQ=255) cTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCg > 1:7631179/1‑71 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:7272678/1‑48 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:6177292/1‑48 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:797286/1‑48 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:7932131/1‑48 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:2726072/1‑48 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGt > 1:3977130/1‑71 (MQ=255) gtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa < 1:1009454/62‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTc < 1:2881184/70‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCa < 1:767529/71‑1 (MQ=255) ggcACGACGCAATACGCAGGTTTACGATCTGACAgttgtt < 1:5793193/38‑1 (MQ=25) gTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgtt < 1:4483119/40‑1 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac < 1:5686057/48‑1 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:4825207/43‑1 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc < 1:2466307/70‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:1780975/1‑70 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:1423343/1‑70 (MQ=255) cgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGa > 1:2707777/1‑71 (MQ=255) cgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGa > 1:4659480/1‑71 (MQ=255) cgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGa > 1:7545848/1‑71 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca < 1:4761433/41‑1 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt > 1:7442357/1‑71 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt > 1:5897530/1‑71 (MQ=255) acgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATg < 1:4228950/71‑1 (MQ=255) cgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATgg > 1:5507748/1‑71 (MQ=255) cgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATgg < 1:7363912/71‑1 (MQ=255) cgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATg > 1:2108699/1‑70 (MQ=255) gCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa > 1:7420689/1‑35 (MQ=255) gCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATgg > 1:6769657/1‑70 (MQ=255) gCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGt < 1:2033715/71‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:3911010/71‑1 (MQ=255) ccGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTaa > 1:3463205/1‑71 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGt < 1:3074188/43‑1 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGt < 1:1386037/43‑1 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc < 1:2649771/55‑1 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTc > 1:64947/1‑65 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTc > 1:2790532/1‑65 (MQ=255) gCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACg > 1:2302420/1‑71 (MQ=255) cAGGATTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATg < 1:1682854/61‑1 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAg > 1:3518399/1‑47 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGcc < 1:4063337/71‑1 (MQ=255) gTTTACGATCTGACAGTTGTTTTAACAACAACGgcg < 1:4135558/36‑1 (MQ=255) gTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa < 1:2183742/40‑1 (MQ=255) gTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa < 1:4516535/40‑1 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGAt > 1:3908681/1‑41 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGt > 1:7493914/1‑46 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAgg > 1:2245609/1‑70 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAgg > 1:4575094/1‑70 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa > 1:3135722/1‑37 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa > 1:1571269/1‑37 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa > 1:854156/1‑37 (MQ=255) aCGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAggca < 1:3540774/70‑3 (MQ=255) aCGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt > 1:6008180/1‑71 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:7427178/70‑1 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:5158066/70‑1 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:6492034/70‑1 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:446749/70‑1 (MQ=255) aTCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAggca < 1:7132563/67‑3 (MQ=255) aTCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGtt > 1:5768425/1‑71 (MQ=255) | TGCTGCGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATGTT > AP009048/3684970‑3685105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |