| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 4,233,032 | C→A | 7.6% | intergenic (+80/+11) | yjbB → / ← pepE | predicted transporter/(alpha)‑aspartyl dipeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 4,233,032 | 0 | C | A | 7.6% | 255.1 / 4.3 | 78 | intergenic (+80/+11) | yjbB/pepE | predicted transporter/(alpha)‑aspartyl dipeptidase |
| Reads supporting (aligned to +/- strand): ref base C (44/28); new base A (2/4); total (46/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
TAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > AP009048/4232967‑4233101 | tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCaa > 1:5579175/1‑71 (MQ=255) ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAAtt > 1:3184792/1‑71 (MQ=255) ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAAtt > 1:2920410/1‑71 (MQ=255) gCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTc < 1:1060183/71‑1 (MQ=255) ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCg > 1:3779133/1‑63 (MQ=255) ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAAtt < 1:1974841/69‑1 (MQ=255) tGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACt > 1:616697/1‑71 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTc < 1:3490948/66‑1 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACtt > 1:1363010/1‑70 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACt < 1:3125710/69‑1 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACt > 1:7645225/1‑69 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaa < 1:228958/71‑1 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaa < 1:7801562/71‑1 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaa < 1:5953320/70‑1 (MQ=255) cgcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg < 1:5485127/71‑1 (MQ=255) cgcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg < 1:1735210/71‑1 (MQ=255) cgcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg < 1:7239894/71‑1 (MQ=255) gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg < 1:7575328/71‑1 (MQ=255) gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAgg < 1:3309026/53‑1 (MQ=255) gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAgg < 1:4842987/53‑1 (MQ=255) gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAgg < 1:1986592/53‑1 (MQ=255) gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAgg < 1:7314295/53‑1 (MQ=255) cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCgg < 1:248578/52‑1 (MQ=18) gTCAAGCGTCGCATCAGGGACTATGAACAAGATGCCGGAT‑CATGCATCAGGCa > 1:5545544/1‑53 (MQ=37) gTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAGGCa > 1:7273669/1‑53 (MQ=255) tCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATcc < 1:5927415/48‑1 (MQ=255) cAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc > 1:5121009/1‑71 (MQ=255) cAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc > 1:2410217/1‑71 (MQ=255) aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCaa < 1:1186634/51‑1 (MQ=255) aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg < 1:37096/65‑1 (MQ=255) aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGa > 1:945209/1‑69 (MQ=255) aGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCa < 1:3758003/71‑1 (MQ=255) gCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGCCCAg > 1:4653460/1‑71 (MQ=255) gCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAg < 1:3141356/71‑1 (MQ=255) gCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAg > 1:7427982/1‑71 (MQ=255) tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTc < 1:5497408/49‑1 (MQ=255) tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCa < 1:7346768/67‑1 (MQ=255) tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCtt < 1:4871179/71‑1 (MQ=255) cGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTc > 1:3942660/1‑71 (MQ=255) cGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTc > 1:551897/1‑71 (MQ=255) gCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACtt > 1:1668234/1‑51 (MQ=255) gCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACtt > 1:854368/1‑51 (MQ=255) cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCa > 1:7570305/1‑47 (MQ=255) cAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc > 1:6657413/1‑70 (MQ=255) cAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg > 1:913962/1‑71 (MQ=255) cACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAc > 1:4151023/1‑71 (MQ=255) aCTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAcc > 1:5989640/1‑71 (MQ=255) tGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:3287961/1‑36 (MQ=255) tGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:2850664/1‑36 (MQ=255) gAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:1521097/1‑35 (MQ=255) gAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:7199933/1‑35 (MQ=255) gAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:7191188/1‑35 (MQ=255) gAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc > 1:6670754/1‑35 (MQ=255) gAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttc > 1:1130121/1‑71 (MQ=255) aaCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg > 1:4220177/1‑44 (MQ=255) aaCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg > 1:4498948/1‑60 (MQ=255) aCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaaa < 1:1995980/40‑1 (MQ=255) aCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttctt < 1:7482496/71‑1 (MQ=255) aCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttctt < 1:3161962/71‑1 (MQ=255) aCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttct > 1:6102334/1‑70 (MQ=255) cAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAg > 1:935167/1‑49 (MQ=255) gATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttct > 1:1585079/1‑66 (MQ=255) tGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAg < 1:6343939/71‑1 (MQ=255) gCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGc > 1:6916156/1‑71 (MQ=255) ccGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGcc > 1:3383136/1‑71 (MQ=255) ccGGAT‑CATCCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGcc > 1:4148253/1‑71 (MQ=255) ggAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAc > 1:3462586/1‑53 (MQ=255) gAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCtt > 1:7234389/1‑70 (MQ=255) gAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa < 1:4422874/71‑1 (MQ=255) aTGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac < 1:6229175/70‑1 (MQ=255) cATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCa > 1:86132/1‑38 (MQ=255) cATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCa > 1:3987361/1‑38 (MQ=255) cATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAAcaca > 1:4067573/1‑70 (MQ=255) cATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAt < 1:2865334/71‑1 (MQ=255) aTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa < 1:1459011/42‑1 (MQ=255) aTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAt > 1:618495/1‑70 (MQ=255) aTCCGGCAATTAACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATa < 1:7889711/71‑1 (MQ=255) tCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCt > 1:2314834/1‑60 (MQ=255) tCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAt > 1:5479272/1‑69 (MQ=255) ccGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGc > 1:4766842/1‑45 (MQ=255) cGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg < 1:5442079/70‑1 (MQ=255) cGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg < 1:7749759/70‑1 (MQ=255) cGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg < 1:2608468/70‑1 (MQ=255) cGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg < 1:5742215/70‑1 (MQ=255) | TAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > AP009048/4232967‑4233101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |