| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 609,476 | A→G | 5.5% | intergenic (‑165/+1) | entD ← / ← fepA | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 609,476 | 0 | A | G | 5.5% | 422.1 / 11.8 | 146 | intergenic (‑165/+1) | entD/fepA | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base A (67/71); new base G (5/3); total (72/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 152 total aligned reads displayed.
GGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGCCCCGGCACCG > AP009048/609407‑609546 | ggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCAt < 1:4467367/71‑1 (MQ=255)ggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCAt > 1:3662887/1‑71 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCAt > 1:2214797/1‑70 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATc < 1:6263926/71‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATc < 1:217419/71‑1 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCAt > 1:4119157/1‑69 (MQ=255) gATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATcgg > 1:4416089/1‑67 (MQ=255) gATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGaa < 1:586060/71‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGt < 1:5034899/71‑1 (MQ=255) aaGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTg > 1:6451364/1‑71 (MQ=255) aaGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTg > 1:2358680/1‑71 (MQ=255) gCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGgt > 1:1223834/1‑71 (MQ=255) cGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGaa > 1:6922265/1‑64 (MQ=255) gTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAg < 1:2178768/61‑1 (MQ=255) gTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGgtgt > 1:7474475/1‑71 (MQ=255) tCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGtt > 1:1908663/1‑70 (MQ=255) cACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGttt > 1:2336040/1‑70 (MQ=255) cACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGtt > 1:2026877/1‑69 (MQ=255) cgccgcATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACg > 1:1718169/1‑71 (MQ=255) gccgcATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGc < 1:7654689/71‑1 (MQ=255) ccgcATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAg < 1:1963804/54‑1 (MQ=255) cgcATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCt < 1:4021075/70‑1 (MQ=255) cATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGTTGTTTACGCTCat < 1:4239660/71‑1 (MQ=255) cATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCat < 1:3817595/71‑1 (MQ=255) cATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCat < 1:369017/71‑1 (MQ=255) aTCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCat < 1:4559861/70‑1 (MQ=255) tCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCa < 1:5316977/68‑1 (MQ=255) tCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCa < 1:5631879/68‑1 (MQ=255) ccGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTa > 1:4833292/1‑61 (MQ=255) ccGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTa > 1:7610779/1‑61 (MQ=255) cGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCatat > 1:4351272/1‑69 (MQ=255) cATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGttt < 1:5056891/56‑1 (MQ=255) cATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGttt < 1:3068111/56‑1 (MQ=255) cATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCac < 1:528128/71‑1 (MQ=255) cATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCac < 1:3423054/71‑1 (MQ=255) tGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGa < 1:3238108/43‑1 (MQ=255) tGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGa < 1:329285/43‑1 (MQ=255) tGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGa < 1:1456338/43‑1 (MQ=255) gAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGtt < 1:5664479/52‑1 (MQ=255) aaCGACGCGCACTTTGTCAACAATCTGACGTTAGCATCa > 1:1603819/1‑39 (MQ=255) aaCGACGCGCACTTTGTCAACAATCTGACGTTAGCATCa > 1:4123520/1‑39 (MQ=255) aaCGACGCGCACTTTGTCAACAATCTGACGTTAGCATCa > 1:2854344/1‑39 (MQ=255) aaCGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGtt < 1:3159263/51‑1 (MQ=255) acgaggCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTgg > 1:1769419/1‑45 (MQ=255) acgacgCGCACTTTGTCAACAATCTGACGTTAGCATCAGaa > 1:5731396/1‑41 (MQ=255) acgacgCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTgg > 1:6992482/1‑45 (MQ=255) acgacgCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTgg > 1:4927997/1‑45 (MQ=255) cgacgCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCacgtacgt > 1:110934/1‑71 (MQ=255) gacgCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTc < 1:3271129/71‑1 (MQ=255) gcgcACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCg < 1:2465694/71‑1 (MQ=255) gcgcACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCg < 1:5412467/71‑1 (MQ=255) cgcACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCgg < 1:5534423/71‑1 (MQ=255) gcACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGc < 1:3011917/71‑1 (MQ=255) cACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTAc < 1:6953943/45‑1 (MQ=255) cACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTAc < 1:925556/45‑1 (MQ=255) aCTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGgtgt > 1:6388943/1‑40 (MQ=255) cTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTAc < 1:707033/43‑1 (MQ=255) cTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCt < 1:680149/46‑1 (MQ=255) cTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCg < 1:1309926/71‑1 (MQ=255) cTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCg > 1:7366537/1‑71 (MQ=255) tttGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCacg < 1:4084180/56‑1 (MQ=255) ttGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTAc > 1:5555082/1‑41 (MQ=255) tGTCAACAATCTGACGTTAGCATCAGAAGTGGgtg > 1:3002776/1‑35 (MQ=255) tGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGc < 1:4191500/42‑1 (MQ=255) tGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCacg > 1:4598344/1‑54 (MQ=255) tGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCacg > 1:7589959/1‑54 (MQ=255) tGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGtt < 1:7372040/70‑1 (MQ=255) gTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTta < 1:6970738/70‑1 (MQ=255) tCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGc < 1:4844260/40‑1 (MQ=255) tCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTtat < 1:5388897/70‑1 (MQ=255) caacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCt > 1:1302467/1‑40 (MQ=255) aacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCg < 1:1379949/59‑1 (MQ=255) aacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAgg < 1:2904530/71‑1 (MQ=255) aacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAgg < 1:2022847/71‑1 (MQ=255) aacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAg < 1:4172284/70‑1 (MQ=255) aacaaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAg < 1:1472404/70‑1 (MQ=255) aaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCac > 1:2278659/1‑46 (MQ=255) aaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCac > 1:5460437/1‑46 (MQ=255) aaTCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCac > 1:3237159/1‑46 (MQ=255) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCacgta > 1:7492396/2‑48 (MQ=21) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCacgta > 1:7257973/2‑48 (MQ=21) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCacgta > 1:6642135/2‑48 (MQ=21) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTc > 1:7937092/2‑52 (MQ=25) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCg < 1:7248046/59‑1 (MQ=37) ttCTGATGCTAACGTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCg < 1:3411010/59‑1 (MQ=37) tCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAg > 1:775177/1‑65 (MQ=255) tCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAg > 1:2593560/1‑65 (MQ=255) tGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCgg < 1:7089220/53‑1 (MQ=255) gACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGcc > 1:1596888/1‑71 (MQ=255) aCGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGc < 1:7773303/69‑1 (MQ=255) cGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGcccc > 1:813759/1‑71 (MQ=255) cGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGcccc > 1:1416213/1‑71 (MQ=255) cGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGcccc > 1:4299405/1‑71 (MQ=255) gTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAgg > 1:7690807/1‑60 (MQ=255) gTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAgg > 1:6324707/1‑60 (MQ=255) aTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTcc > 1:5651371/1‑40 (MQ=255) aTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGc < 1:2386621/44‑1 (MQ=255) aTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGc < 1:3890546/44‑1 (MQ=255) aTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGCCCCGGCAcc < 1:4670438/70‑1 (MQ=255) aTCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGCCCCGGCACCg > 1:6016703/1‑71 (MQ=255) | GGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACCACGTACGTCCCGGCTCGTTATAGGTATACGCCCCGGCACCG > AP009048/609407‑609546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |