| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1587162 | 31 (0.510) | 5 (0.090) | 3/88 | NT | 13.2% | coding (39/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system |
| ? | Exported | = 1587179 | 38 (0.690) | coding (56/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system | |||||
CTTTTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1587091‑1587162‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCTT < Exported/1587179‑1587113 CTTTTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTT > 1:5302437/1‑71CTTTTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTT > 1:5215486/1‑71 TTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTT < 1:3593507/68‑1 GTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCAGAAGCAGAGCTTT < 1:517873/66‑1 GTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTAAGAAGCAGAGCTTT < 1:941005/66‑1 TAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTT < 1:1211076/49‑1 AAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCAGAAGCAGAGCTTTAC > 1:4952492/1‑66 GGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTT < 1:3346934/46‑1 AGGCATTTTAGCATCCCCGGGTATCGCTTTCAGAAGCAGAGCTT < 1:4117507/44‑1 AGGCATTTTAGCATCCCCGGGTATCGCTTTCAGAAGCAGAGCTT < 1:4710888/44‑1 CTTTCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCT > 1:4669896/1‑71 CTTTCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCT > 1:3163810/1‑71 TCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCTT < 1:4322584/69‑1 TCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCTT < 1:3449265/69‑1 TCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCT > 1:3398413/1‑50 TCAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCT > 1:5603449/1‑50 CAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATG > 1:5009447/1‑38 CAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATG > 1:3684502/1‑38 CTTTTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1587091‑1587162‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcAGAAGCAGAGCTTTACCGAAAGCGATACCCGGGGATGCTAAAATGCCTGAAATCATAACCCTACCTT < Exported/1587179‑1587113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |